Dinh/Dinh 2015/NOTES/2015-11-12

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Twins WGBS data[edit]

  • Mapping with BisReadMapper (BWA).
  • Trimming with TrimGalore
  • Trim/Map rates
Tube # ID# PairID Time Case/Control SampleID Sample Library ID FastqID Total reads sequenced Total reads post trimming Total bases Total mapped bases Map rate Average depth of coverage chrM CpGs %methyl F/R correlation (minDepth=10)
1 27499 Twin 1 A V1 control Twin1A_control HL_01 Rana_S1 53,939,426 53,938,231 6,867,185,230 361,362,875 5% 0.1 25.2% 0.50
2 27816 Twin 1 B V1 case Twin1B_case HL_02 Rana_S2 91,770,148 91,763,809 12,073,881,584 589,048,085 5% 0.2 14.6% 0.40
14 32466 Twin 2 B V1 control Twin2B_control HL_14 Rana_S12 152,944,091 152,939,179 22,601,803,849 14,175,687,385 63% 4.7 1.4% 0.87
3 28593 Twin 3 A V1 control Twin3A_control HL_03 Rana_S3 91,210,871 91,208,575 12,299,618,556 642,298,498 5% 0.2 14.6% 0.45
4 29006 Twin 3 B V1 case Twin3B_case HL_04 Rana_S4 88,162,604 88,159,811 13,014,989,558 7,465,110,537 57% 2.5 2.2% 0.79
15 33643 Twin 4 A V1 case Twin4A_case HL_15 Rana_S13 143,141,414 143,137,572 21,181,316,146 14,792,129,556 70% 4.9 1.7% 0.89
16 33644 Twin 4 B V1 control Twin4B_control HL_16 Rana_S14 127,423,984 127,419,413 18,842,435,056 11,803,330,701 63% 3.9 1.7% 0.84
5 36452 Twin 5 A V1 case Twin5A_case HL_05 Rana_S5 142,256,271 142,252,105 21,035,952,187 13,667,580,670 65% 4.6 2.3% 0.78
6 36453 Twin 5 B V1 control Twin5B_control HL_06 Rana_S6 169,862,333 169,858,233 25,098,872,959 16,645,449,349 66% 5.5 1.4% 0.83
7 30603 Twin 6 A V1 control Twin6A_control HL_07 Rana_S7 115,052,316 115,048,590 17,014,477,565 11,977,062,753 70% 4 1.6% 0.85
8 30604 Twin 6 B V1 case Twin6B_case HL_08 Rana_S8 113,207,091 113,203,646 16,742,846,029 10,764,958,456 64% 3.6 1.9% 0.84
9 38951 Twin 7 A V1 control Twin7A_control HL_09 Rana_S9 95,590,286 95,587,222 14,119,084,739 8,625,934,307 61% 2.9 2.1% 0.83
10 38952 Twin 7 B V1 case Twin7B_case HL_10 Rana_S10 143,714,976 143,710,458 21,254,579,865 13,576,247,502 64% 4.5 2.2% 0.83
11 39427 Twin 8 A V1 case Twin8A_case HL_11 Rana_S11 123,892,010 123,888,682 18,281,187,575 10,672,946,898 58% 3.6 2.2% 0.87
12 39428 Twin 8 B V1 control Twin8B_control HL_17 Rana_S15 121,479,698 121,477,017 17,951,004,283 11,345,912,741 63% 3.8 1.5% 0.88