Dinh/NOTES/2010-10-25
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DMR220K subsetting Mapping with SOAP[edit]
Sample | Fastq file | #Mappable reads | #Mapped reads | Mapping Rate | Combined Mapping Rate |
BJiPS.s1capture | s_8_ID1.txt.fwd.soap.out | 390095 | 165772 | 42.50% | 76.90% |
s_8_ID1.txt.rev.soap.out | 390095 | 134194 | 34.40% | ||
BJiPS.s2capture | s_8_ID2.txt.fwd.soap.out | 449444 | 201172 | 44.76% | 78.57% |
s_8_ID2.txt.rev.soap.out | 449444 | 151946 | 33.81% | ||
BJiPS.s3capture | s_8_ID3.txt.fwd.soap.out | 3321575 | 1378644 | 41.51% | 74.82% |
s_8_ID3.txt.rev.soap.out | 3321575 | 1106681 | 33.32% | ||
BJiPS.s4capture | s_8_ID4.txt.fwd.soap.out | 4015387 | 1188094 | 29.59% | 52.99% |
s_8_ID4.txt.rev.soap.out | 4015387 | 939651 | 23.40% | ||
BJiPS.s5capture | s_8_ID5.txt.fwd.soap.out | 2089841 | 246064 | 11.77% | 21.36% |
s_8_ID5.txt.rev.soap.out | 2089841 | 200259 | 9.58% | ||
BJiPS.s6capture | s_8_ID6.txt.fwd.soap.out | 743262 | 57505 | 7.74% | 13.45% |
s_8_ID6.txt.rev.soap.out | 743262 | 42430 | 5.71% | ||
BJiPS.s7capture | s_8_ID7.txt.fwd.soap.out | 366902 | 59852 | 16.31% | 32.72% |
s_8_ID7.txt.rev.soap.out | 366902 | 60213 | 16.41% | ||
BJiPS.mAcaptured | s_8_ID8.txt.fwd.soap.out | 3909851 | 1862877 | 47.65% | 84.67% |
s_8_ID8.txt.rev.soap.out | 3909851 | 1447736 | 37.03% | ||
BJiPS.mBcaptured | s_8_ID9.txt.fwd.soap.out | 8022075 | 4058018 | 50.59% | 88.74% |
s_8_ID9.txt.rev.soap.out | 8022075 | 3061000 | 38.16% |