Dinh/NOTES/2010-10-25

From ZhangLabWiki
Jump to navigation Jump to search

DMR220K subsetting Mapping with SOAP[edit]

Sample Fastq file #Mappable reads #Mapped reads Mapping Rate Combined Mapping Rate
BJiPS.s1capture s_8_ID1.txt.fwd.soap.out 390095 165772 42.50% 76.90%
s_8_ID1.txt.rev.soap.out 390095 134194 34.40%
BJiPS.s2capture s_8_ID2.txt.fwd.soap.out 449444 201172 44.76% 78.57%
s_8_ID2.txt.rev.soap.out 449444 151946 33.81%
BJiPS.s3capture s_8_ID3.txt.fwd.soap.out 3321575 1378644 41.51% 74.82%
s_8_ID3.txt.rev.soap.out 3321575 1106681 33.32%
BJiPS.s4capture s_8_ID4.txt.fwd.soap.out 4015387 1188094 29.59% 52.99%
s_8_ID4.txt.rev.soap.out 4015387 939651 23.40%
BJiPS.s5capture s_8_ID5.txt.fwd.soap.out 2089841 246064 11.77% 21.36%
s_8_ID5.txt.rev.soap.out 2089841 200259 9.58%
BJiPS.s6capture s_8_ID6.txt.fwd.soap.out 743262 57505 7.74% 13.45%
s_8_ID6.txt.rev.soap.out 743262 42430 5.71%
BJiPS.s7capture s_8_ID7.txt.fwd.soap.out 366902 59852 16.31% 32.72%
s_8_ID7.txt.rev.soap.out 366902 60213 16.41%
BJiPS.mAcaptured s_8_ID8.txt.fwd.soap.out 3909851 1862877 47.65% 84.67%
s_8_ID8.txt.rev.soap.out 3909851 1447736 37.03%
BJiPS.mBcaptured s_8_ID9.txt.fwd.soap.out 8022075 4058018 50.59% 88.74%
s_8_ID9.txt.rev.soap.out 8022075 3061000 38.16%