Noi:Samples from Moores Cancer Center
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Moores Cancer Center sample tracking for MONOD project[edit]
2014-03-04[edit]
- Plasma (P), serum (S), and buffy coat (BC) from 3 cases (4 aliquots/type/case)
Case/Accession # Project ID # Receiving Date Type/ Amount Anatomic site Diagnosis AA0005 UCSD-004-1 3/4/14 4-BC, P, S N/A Eosinophilia AA0007 UCSD-004-2 3/4/14 4-BC, P, S N/A Anemia AA0008 UCSD-004-3 3/4/14 4-BC, P,3-S N/A Anemia
2014-05-27[edit]
Serum (S) samples from 10 cases of pancreatic cancer patients[edit]
Project ID # Anatomic site Diagnosis Ethnicity Sample type/ amount UCSD-004-04 Pancreas Adenocarcinoma, moderately to poorly differentiated, c/w pT3N0MX Hispanic/ Latino S/2 aliquots UCSD-004-05 Pancreas Adenocarcinoma, ductal type, moderately to poorly differentiated, pT3N1MX White S/2 aliquots UCSD-004-06 Pancreas Poorly differentiated adenocarcinoma, ductal type, pT3N1MX White S/2 aliquots UCSD-004-07 Pancreas Adenocarcinoma, ductal type, moderately to poorly differentiated, involving head and body of pancreas and invading into duodenal submucosa and peripancreatic soft tissue, c/w pT3N1MX Hispanic/ Latino S/2 aliquots UCSD-004-08 Pancreas Poorly differentiated pancreatic ductal adenocarcinoma, invading into duodenum, consistent with pT3N0MX White S/2 aliquots UCSD-004-09 Pancreas Invasive pancreatic duct adenocarcinoma, moderately to poorly differentiated, Stage: ypT3N1MX, Stage IIB White S/2 aliquots UCSD-004-10 Pancreas Invasice ductal adenocarcinoma of the pancreas, moderately to poorly differentiated, T3N1MX, stage IIB White S/2 aliquots UCSD-004-11 Pancreas Metastatic pancreatic adenocarcinoma Hispanic/ Latino S/2 aliquots UCSD-004-12 Pancreas Metastatic adenocarcinoma Non-hispanic S/2 aliquots UCSD-004-13 Pancreas Adenocarcinoma, moderately to poorly differentiated, c/w pT3N0MX unknown S/2 aliquots
- Original file of sample info.
- TNM staging system: [1]
- DNA extraction result
- Assigne Zhang lab ID based on sample types
Project ID # Zhang lab ID (S=serum) UCSD-004-04 PC-S_1 UCSD-004-05 PC-S_2 UCSD-004-06 PC-S_3 UCSD-004-07 PC-S_4 UCSD-004-08 PC-S_5 UCSD-004-09 PC-S_6 UCSD-004-10 PC-S_7 UCSD-004-11 PC-S_8 UCSD-004-12 PC-S_9 UCSD-004-13 PC-S_10
2014-06-05[edit]
Plasma and tumor tissue samples from pancreatic cancer patients[edit]
- Plasma (P) and solid tumor tissue (T).
- Plasma samples from 10 cases.
- Tumor tissues from 5 cases (match with plasma samples)
Project ID Anatomic site Date Ethinicity Amount/type UCSD-004-04 Pancreas 6/5/14 Hispanic/ Latino 3P/20mg T UCSD-004-05 Pancreas 6/5/14 White 3P/20mg T UCSD-004-06 Pancreas 6/5/14 White 3P UCSD-004-07 Pancreas 6/5/14 Hispanic/ Latino 3P/20mg T UCSD-004-08 Pancreas 6/5/14 White 3P UCSD-004-09 Pancreas 6/5/14 White 3P/20mg T UCSD-004-10 Pancreas 6/5/14 White 3P/20mg T UCSD-004-11 Pancreas 6/5/14 Hispanic/ Latino 3P UCSD-004-12 Pancreas 6/5/14 Non-hispanic 3P UCSD-004-13 Pancreas 6/5/14 unknown 3P
- Note: Diagnosis is the same as sample info on 2014-05-27
- DNA extraction results
- Assign Zhang lab ID based on sample types
Project ID # Zhang lab ID (P=plasma) Zhang lab ID (T=tumor tissue) UCSD-004-04 PC-P_1 PC-T_1 UCSD-004-05 PC-P_2 PC-T_2 UCSD-004-06 PC-P_3 UCSD-004-07 PC-P_4 PC-T_4 UCSD-004-08 PC-P_5 UCSD-004-09 PC-P_6 PC-T_6 UCSD-004-10 PC-P_7 PC-T_7 UCSD-004-11 PC-P_8 UCSD-004-12 PC-P_9 UCSD-004-13 PC-P_10
2014-06-26[edit]
Plasma samples from 10 cases of colon cancer[edit]
- Project ID of colon samples: UCSD-006
- Now I know that different cancer types have different Project ID (pancreas UCSD-004, colon UCSD-006, lung UCSD-007). From this batch of sample, I will assign sample code to each sample based on project ID and sample type. Ex. 6-P_1 = colon cancer - plasma sample - sample #1
Project ID Anatomic site Date Diagnosis Ethnicity Amount/type UCSD-006.1 Colon 6/26/14 Poorly differentiated adenocarcinoma, consistent with recurrent colonic adenocarcinoma White 3P aliquot/ case UCSD-006.2 Colon 6/26/14 Metastatic malignant hemangiopericytoma/ malignant solitary fibrous tumor White 3P aliquot/ case UCSD-006.3 Colon 6/26/14 Sigmoid colon, rectum, and anus, resection. Recurrent invasive moderately- to poorly- differentiated White/Non-hispanic 3P aliquot/ case UCSD-006.4 Colon 6/26/14 Metastatic adenocarcinoma. White/Non-hispanic 3P aliquot/ case UCSD-006.5 Colon 6/26/14 Metastatic mucinous adenocarcinoma. White/Non-hispanic 3P aliquot/ case UCSD-006.6 Colon 6/26/14 Metastatic moderately-differentiated adenocarcinoma with mucinous features. White 3P aliquot/ case UCSD-006.7 Colon 6/26/14 Adenocarcinoma White 3P aliquot/ case UCSD-006.8 Colon 6/26/14 Metastatic moderately-differentiated adenocarcinoma with municous features White 3P aliquot/ case UCSD-006.9 Colon 6/26/14 Adenocarcinoma with municous features, moderately differentiated, pT4aN2b White 3P aliquot/ case UCSD-006.10 Colon 6/26/14 Mucinous adenocarcinoma, moderately differentiated White 3P aliquot/ case
Plasma samples from 10 cases of lung cancer[edit]
- Project ID of lung samples: UCSD-007
Project ID Anatomic site Date Diagnosis Ethnicity Amount/type UCSD-007.1 Lung 6/26/14 Invasive moderately differentiated adenocarcinoma, pT26N0 Asian 3P aliquot/case UCSD-007.2 Lung 6/26/14 Poorly differentiated squamous cell carcinoma. Consistent with pT2N0MX, stage IB White 3P aliquot/case UCSD-007.3 Lung 6/26/14 Metastatic melanoma White 3P aliquot/case UCSD-007.4 Lung 6/26/14 Squamous cell carcinoma, clear cell variant, moderately differentiated White 3P aliquot/case UCSD-007.5 Lung 6/26/14 Squamous cell carcinoma, pT1bN0 White 3P aliquot/case UCSD-007.6 Lung 6/26/14 Adenocarcinoma, mix subtype, including 60% bronchioalveolar carcinoma, mucinous subtype with 40% invasive carcinoma, acinar and papillary subtypes White 3P aliquot/case UCSD-007.7 Lung 6/26/14 Invasive squamous carcinoma, moderately differentiated, consistent with pT1N0MX White 3P aliquot/case UCSD-007.8 Lung 6/26/14 Invasive adenocarcinoma, poorly differentiated White 3P aliquot/case UCSD-007.9 Lung 6/26/14 Non-small-cell carcinoma White 3P aliquot/case UCSD-007.10 Lung 6/26/14 Poorly differentiated carcinoma, possibly adenoSCC White 3P aliquot/case
2014-06-27[edit]
Solid tumor tissue samples from 5 cases of colon cancer[edit]
Project ID Anatomic site Date Diagnosis Ethnicity Amount/type UCSD-006.1 Colon 6/27/14 Poorly differentiated adenocarcinoma, consistent with recurrent colonic adenocarcinoma. White 20mg solid tissue UCSD-006.2 Colon 6/27/14 Metastatic malignant hemagiopericytoma/malignant solitary fibrous tumor. White 20mg solid tissue UCSD-006.3 Colon 6/27/14 Sigmoid colon, rectum, and anus, resection. Recurrent invasive moderately- to poorly- differentiated adenocarcinoma, ypT3N1cMX. Underline was not stated in plasma sample sheet. White/Non-hispanic 20mg solid tissue UCSD-006.4 Colon 6/27/14 Metastatic adenocarcinoma. White/Non-hispanic 20mg solid tissue UCSD-006.5 Colon 6/27/14 Metastatic mucinous adenocarcinoma. White/Non-hispanic 20mg solid tissue
Solid tumor tissue samples from 5 cases of lung cancer[edit]
Project ID Anatomic site Date Diagnosis Ethnicity Amount/type UCSD-007.1 Lung 6/27/14 Invasive moderately differentiated adenocarcinoma, pT26N0 Asian 20mg solid tissue UCSD-007.2 Lung 6/27/14 Poorly differentiated squamous cell carcinoma. Consistent with pT2N0MX, stage IB White 20mg solid tissue UCSD-007.3 Lung 6/27/14 Metastatic melanoma White 20mg solid tissue UCSD-007.4 Lung 6/27/14 Squamous cell carcinoma, clear cell variants, moderately differentiated White 20mg solid tissue UCSD-007.5 Lung 6/27/14 Squamous cell carcinoma, pT1bN0 White 20mg solid tissue
- Note: For both colon and lung solid tissues, the mass is estimated to be ~20mg, but the size seemed to be larger.
- DNA extraction result