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=== Genome-wide DNA methylation haplotype change caused by smoking === * methylation haplotype files for each samples cd /home/shg047/work/twin HL_01.sorted.clipped.hapInfo.txt HL_04.sorted.clipped.hapInfo.txt HL_07.sorted.clipped.hapInfo.txt HL_10.sorted.clipped.hapInfo.txt HL_16.sorted.clipped.hapInfo.txt HL_02.sorted.clipped.hapInfo.txt HL_05.sorted.clipped.hapInfo.txt HL_08.sorted.clipped.hapInfo.txt HL_11.sorted.clipped.hapInfo.txt HL_17.sorted.clipped.hapInfo.txt HL_03.sorted.clipped.hapInfo.txt HL_06.sorted.clipped.hapInfo.txt HL_09.sorted.clipped.hapInfo.txt HL_14.sorted.clipped.hapInfo.txt HL_Undet.sorted.clipped.hapInfo.txt * MHL files ** Compare the difference with different parameter in hapinfo calling cd /home/shg047/oasis/twin/hapinfo perl ~/bin/hapinfo2bam [[File:D802.tm.png]] * Other dataset Epigenome-wide association study of smoking and DNA methylation in non-small cell lung neoplasms* We performed a two-stage discovery (n = 326) and validation (n = 185) analysis to investigate the association of epigenetic DNA methylation level with cigarette smoking pack-years.
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