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===bcl2fastq installation=== * Install dependencies sudo apt-get update sudo apt-get upgrade sudo apt-get install zlibc sudo apt-get install libc6 # provides librt and libpthread sudo apt-get install gcc sudo apt-get install g++ sudo apt-get install libboost1.54-all-dev sudo apt-get install libboost-all-dev sudo apt-get install cmake* * Install bcl2fastq: these steps did not work. I tried installing using alien/rpm instead. $ tar -vxf bcl2fastq_v1.8.4.tar $ mkdir bcl2fastq_v1.8.4-build $ cd bcl2fastq_v1.8.4-build $ ../bcl2fastq_v1.8.4/src/configure &> log $ make $ make install * Change configure scripts to use older version of perl: #!/usr/bin/env perl5.10.1
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