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==September 6-10== *'''TO DO:''' **Finish Perl probe generation script *Worked on Perl script *'''Learned several issues with how Perl passes arrays.''' **Implemented workarounds in code; used split and join in order to pass multiple arrays as multiple scalars. *'''Algorithm to make sure all possible probe combinations were used was implemented using recursion''' **Several bugs in recursion were present, causing infinite loops. **Fixed this; recursive algorithm to generate probe sets now works. *'''Looked around for list of Cosmic set genes''' **Found in Cosmic_3760_exons.list.txt ***Located in /home/kun/MIP/exonome on pgp.oxf freelogy server **Format of set is: exonID chromosome start end NM_032211-E2 chr10 100000811 100000923 NM_032211-E3 chr10 100001312 100001449 NM_032211-E4 chr10 100002099 100002215 ... ...
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