Editing
Sample record
(section)
Jump to navigation
Jump to search
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
===Jan-Jun=== {| {{table}} | align="center" style="background:#f0f0f0;"|'''Month''' | align="center" style="background:#f0f0f0;"|'''Date''' | align="center" style="background:#f0f0f0;"|'''Probe Set''' | align="center" style="background:#f0f0f0;"|'''Tube label''' | align="center" style="background:#f0f0f0;"|'''Conc. x vol.''' | align="center" style="background:#f0f0f0;"|'''Seq facility''' | align="center" style="background:#f0f0f0;"|'''Lib. Const.''' | align="center" style="background:#f0f0f0;"|'''Read length''' | align="center" style="background:#f0f0f0;"|'''# filtered reads''' | align="center" style="background:#f0f0f0;"|'''# mappable reads''' |- | Feb||6||BSPP-30k-PE||BJ||75.4nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-13|Jie]]||36bp x 2||7,662,828||2,535,784 |- | Feb||6||BSPP-30k-PE|| Hybrid_1||87.6nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-13|Jie]]||36bp x 2||6,829,142||1,946,531 |- | Feb||6||BSPP-30k-PE|| PGP1_F||106nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-13|Jie]]||36bp x 2||8,441,376||2,854,604 |- | Feb||6||BSPP-30k-PE|| HUES12||74.9nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-13|Jie]]||36bp x 2||7,404,514||1,424,697 |- | Feb||6||BSPP-30k-PE|| PGP1_iPS1||90.3nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-22|Jie]]||36bp x 2||5,617,832||1,899,427 |- | Feb||6||BSPP-30k-PE|| PGP1_L||77.6nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-22|Jie]]||36bp x 2||5,258,188||2,220,886 |- | Feb||6||BSPP-30k-PE|| PGP3_L||80.9nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-22|Jie]]||36bp x 2||5,286,442||1,838,971 |- | Feb||6||BSPP-30k-PE|| PGP9_L||96.9nM x 15ul;||BioGem||[[Jie:LabNotes/CpgSeq/2009-1-22|Jie]]||36bp x 2||5,689,552||2,292,028 |- | |||||||||||| |- | March||13||Exome||PGP1-CTRL||48.5ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]||40bp||9,707,995||7,655,774 |- | March||13||Exome||PGP1-shaked||46ng/ul; 30ul||Billy Li (Harvard)||[[Alice:LabNotes/2009-3-13|Alice Li]]||40bp||9,424,752||7,561,445 |- | |||||||||||| |- | |||||||||||| |- | May||25||Exome||PGP1E0509A||77nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||7,471,741||1,086,264 |- | May||25||Exome||PGP2E0509A||64nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||5,014,823||2,595,521 |- | May||25||Exome||PGP3E0509A||49.5nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||5,358,442||3,213,790 |- | May||25||Exome||NA12878E0509A||60nM; 40ul||BioGem||[[Alice:LabNotes/2009-5-24|Alice Li]]||76bp||7,360,495||2,673,495 |- | May||25||Exome||PGP1E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,520,981||2,350,708 |- | May||25||Exome||PGP2E0509k||20nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||5,095,881||2,568,349 |- | May||25||Exome||PGP3E0509k||19nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,734,068||1,989,542 |- | May||25||Exome||NA12878E0509k||33nM; 40ul||BioGem||[[Kun:LabNotes/ExonomeSeq/2009-5-23|Kun Zhang]]||76bp||3,900,764||778,134 |- | |||||||||||| |- | |||||||||||| |- | May ||26||BSPP_end seq||NA21070*1 100406 captured targets|| 25.3ng/ul (96nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]/[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2,535,463 |- | May ||26||BSPP_end seq|| NA21070*1 100406 normalized captured targets|| 23.1ng/ul (87nM) x 15ul;||Yuan Gao||[[Jie:LabNotes/CpgSeq/2009-5-20|Jie]]/[[Kun:LabNotes/CpgSeq/2009-6-9|Kun]]||40bp||2,377,687 |- | |||||||||||| |- | May||29||Exome(end sequencing)||PGP2_052909A||111nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]||40bp||6,390,979 |- | May||29||Exome(end sequencing)||PGP3_052909A||126nM; 15ul||Yuan Gao||[[Alice:LabNotes/2009-5-29|Alice Li]]||40bp||6,110,991 |- | |||||||||||| |- | |||||||||||| |- | June||4||Exome||PGP5-1-060809||62.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,404,283||10,812,047 |- | June||4||Exome||PGP5-2-060809||65.7nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,994,770||11,253,456 |- | June||4||Exome||PGP7-1-060809||75.5nM; 10ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||13,384,832||9,712,648 |- | June||4||Exome||PGP7-2-060809||79.7nM; 20ul||BioGem||[[Alice:LabNotes/2009-6-4|Alice Li]]||36bp||14,204,382/13,509,137||10,519,374/9,961,481 |- | |||||||||||| |- | |||||||||||| |- | June||8||BSPP||DF6-9-9_P16(4)|| 11nM x 10ul x 2 lanes;||BioGem||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||36bp||7,272,312|4,688,926 |- | June||8||BSPP||foreskin|| 15nM x 10ul x 1 lane.||BioGem||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||36bp||3,320,865||1,825,557 |- | |||||||||||| |- | June||10||Exome||PGP1-3-061009||34nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||5,802,565|| |- | June||10||Exome||PGP2-3-061009||25nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||3,193,644|| |- | June||10||Exome||PGP3-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||2,465,788|| |- | June||10||Exome||NA12878-3-061009||22nM; 15ul||Bing Ren||[[Alice:LabNotes/2009-6-10|Alice Li]]||76bp||1,285,265|| |- | June||10||BSPP||NA21070*1_100406_97k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||2,682,703||424,191 |- | June||10||BSPP||DF6-9-9_P16(4)_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||918,811||151,519 |- | June||10||BSPP||foreskin_30k ||21.2nM x 14ul;||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-6-4|Jie]]||76bp||424,770||65,177 |- | |||||||||||| |- | |||||||||||| |- | June||18||Exome||PGP5-1-060809||62.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||4,122,460 |- | June||18||Exome||PGP5-2-060809||65.7nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||3,907,906 |- | June||18||Exome||PGP7-1-060809||75.5nM; 5ul||Bing Ren||[[Alice:LabNotes/2009-6-4|Alice Li]]||41bp||1,419,496 |- |- | June||18||CES27k9bp_end sequening||Hybrid_1_CES27k9bp|| 4.3ng/ul (37nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]||41bp||7,484,832 |- | June||18||CES27k9bp_end sequening|| BJ_CES27k9bp||7.2ng/ul (62nM) x 5ul||Bing Ren||[[Jie:LabNotes/ASE/2009-6-10|Jie]]||41bp||5,643,984 |- | June||18||BSPP||DF6-9-9_P16(4)_97k_repeat|| 11nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||4,761,133 |- | June||18||BSPP||foreskin_97k_repeat ||7.5nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||6,683,303 |}
Summary:
Please note that all contributions to ZhangLabWiki may be edited, altered, or removed by other contributors. If you do not want your writing to be edited mercilessly, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource (see
ZhangLabWiki:Copyrights
for details).
Do not submit copyrighted work without permission!
Cancel
Editing help
(opens in new window)
Navigation menu
Personal tools
Not logged in
Talk
Contributions
Create account
Log in
Namespaces
Page
Discussion
English
Views
Read
Edit
View history
More
Search
Navigation
Main Page
Current events
Recent changes
Random page
Investigators
Matt Cai
Song Chen
Eric Chu
Dinh Diep
Elizabeth Duong
Shicheng Guo
Alan Fung
Daniel Jacobsen
Blue Lake
Huy Lam
Alice Li
Andrew Richards
Brandon Sos
Chris Wei
Yan Wu
Kun Zhang
Tools
What links here
Related changes
Special pages
Page information