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===Robert/Athurva Era=== *Recently reinstalled using MacOS instead of Ubuntu; see notes [[Genome_Miner_Reinstall |here]] *A MacPro (8 core, 16GB RAM, 4TB), dedicated for GA Pipeline (PFBH406) **MAC addresses: ***Port 1: 00:25:00:ee:6f:c8; connected to the campus network; ****IP=132.239.135.41; ****Subnet: 255.255.0.0 ****Gateway: 132.239.135.1 ****DNS: 132.239.0.252, 128.54.16.2 ***Port 2: 00:25:00:ee:3f:85; connected to GA PC; ****IP=192.168.137.11 *Installation of Ubuntu 9.04 (AMD64 Desktop). **Installed rEFIt for dual booting (http://refit.sourceforge.net/). **Installed Ubuntu 9.04 Desktop from ISO image. ***Turned out that all the hard drives were not recognized with the RAID card. Removed the RAID card. ***Press "c" to boot from the CD. ***The OS was install in the hard drive in Bay 4. ***The other two hard drives in Bay 2&3 were also reformatted to ext3 **Ubuntu booted up correctly, but without network connection. Turned out that the Ethernet card was too new. ***Downloaded the driver from sf.net/projects/e1000, manually changed the following two files, compiled and installed the driver. Added the following to the netdev.c: {PCI_VDEVICE(INTEL, 0x10F6), board_82574} and to hw.h #define E1000_DEV_ID_82574L_NEW 0x10F6 *Installed GA_pipeline 1.4 **Install the Ubuntu Development Package: apt-get install build-essential **Installed fftw-3.2.1, need to compile with --enable-single; **Installed gnuplot; **Installed ImageMagik (for the convert function); **Installed zlib, bzlib2; **Install XML::Simple perl module. **Run make, all prerequisites passed. **Installed UNAFold (http://dinamelt.bioinfo.rpi.edu/) in /usr/local/
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