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==Results from Test Assembly== *Previously I ran test assembly on a small subset of Illumina reads (88179998 reads) that included one 200bp library and one 2kb insert library. *There were three tests that I ran: **1a = no error correction for any Illumina read **1b = error correction only on mate-paired 2kb reads **1c = error correction on all Illumina reads *Here are the basic assembly statistics: n n:200 n:N50 min N80 N50 N20 max sum 1772128 504382 181476 200 233 307 456 3238 156.8e6 1a_Illumina_Test_Assembly_Control/test_assembly_control.scafSeq.GC 1768536 535005 189770 200 236 313 471 4194 169.2e6 1b_Illumina_Test_Assembly_no-Mate-correction/test_assembly_1b.scafSeq.GC 1766902 535182 189131 200 236 314 475 4194 169.9e6 1c_Illumina_Test_Assembly_all-correction/test_assembly_1c.scafSeq.GC *Analysis: It seems as though having error correction on all reads provided slightly better assembly results, so I'll apply error correction on all Illumina reads for downstream assembly
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