Editing
Dinh/Dinh 2012/NOTES/2012-3-21
(section)
Jump to navigation
Jump to search
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
==Gene ontology: GREAT== * Used '''awk''' and '''sort -u''' commands to get BED files of unique CpG sites with sequence dependent ASM. binomialTest.cpgs = 113 (background have 64,030 CpGs) tTest.cpgs = 1187 (background have 16,430 CpGs) * changed chr23/24/25 to chrX/Y/M with '''sed''' * Uploaded BED files to GREAT (default settings) and checked biological process. * Binomial test GO (NOTE: after repeating with bigger 45,022 SNP:CPG set, there are no significant enrichment! *TTest GO [[File:TtestGO.png]]
Summary:
Please note that all contributions to ZhangLabWiki may be edited, altered, or removed by other contributors. If you do not want your writing to be edited mercilessly, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource (see
ZhangLabWiki:Copyrights
for details).
Do not submit copyrighted work without permission!
Cancel
Editing help
(opens in new window)
Navigation menu
Personal tools
Not logged in
Talk
Contributions
Create account
Log in
Namespaces
Page
Discussion
English
Views
Read
Edit
View history
More
Search
Navigation
Main Page
Current events
Recent changes
Random page
Investigators
Matt Cai
Song Chen
Eric Chu
Dinh Diep
Elizabeth Duong
Shicheng Guo
Alan Fung
Daniel Jacobsen
Blue Lake
Huy Lam
Alice Li
Andrew Richards
Brandon Sos
Chris Wei
Yan Wu
Kun Zhang
Tools
What links here
Related changes
Special pages
Page information