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==Compare Region 165Mbp-169Mbp of Chromosome 4 from the chambers 10,14,22,24 of PGP1#21 CoRE== * Figure below showing region 160M-170Mbp of Chromosome 4. There was no leakage between neighboring chambers. [[File:PGP1_21CoREAllChambersofChr4.jpg| 1000px]] * Figure focusing on the region 164M-170Mbp of Chromosome 4 in 4 chambers 10,14,22,24 (top to bottom). [[File:PGP1_12CoRE4ChambersofChr4.jpg| 1000px]] * Superimpose the Varbin.50k of the same region to the R prediction map. We can find a pretty nice match of the expected fragments being called. [[File:PGP1_21CoREChamber10.jpg| 500px]] [[File:PGP1_21CoREChamber14.jpg| 500px]] [[File:PGP1_21CoREChamber22.jpg| 500px]] [[File:PGP1_21CoREChamber24.jpg| 500px]] * Directly compare the prediction of these 4 chambers. Clear overlaps in these regions were found. [[File:PGP1_21CoREVarbin_Prediction4chambers.jpg| 500px]] * Stacking up chambers 9-24. Orange represents the region with DNA coverage. * By combining these vectors, pulling each bin with "2" and calling this region covered. Then taking the average of all these vectors. [[File:PGP1_21CoREVarbin_PredictionWholeCell.jpg| 500px]]
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