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===Summary of data=== *RRBS data **July 2014 data: the libraries were sequenced in two runs. Dinh combined the data and did the mapping. ***Bam folder: /media/Ext12T/DD_Ext12T/RRBS_MONOD/Bam_Merged/ ***Mappable_bin_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/1407-combined_RRBS/mappable_bin_hapInfo ***Mld_block_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/1407-combined_RRBS/mld_blocks_stringent_hapInfo **Sept 2014: these batch of libraries were generated with the dRRBS protocol (MSP I & Taq I digestion) ***Bam folder: /media/Ext12T/DD_Ext12T/RRBS_MONOD/140917_dRRBS/BAMfiles ***Mapple_bin_hapInfo folder: ***Mld_block_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/140917_dRRBS/mld_block_stringent_hapInfo *WGBS-SeqCap data ** Dec2014 data: Good libraries, poor enrichment (still usable, just lower coverage) ***Bam folder: /media/Ext12T/DD_Ext12T/MONOD/141216_HiSeqRapidRun/BAMfiles ***Mappable_bin_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/141216_HiSeqRapidRunSeqCap/mappable_bin_hapInfo ***Mld_block_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/141216_HiSeqRapidRunSeqCap/mld_blocks_stringent ** Feb2015 data: Good libraries and good enrichment ***Bam folder: media/Ext12T/DD_Ext12T/MONOD/150209_SN216/SeqCap/BAMfiles/ ***Mld_block_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/150209_SN216/SeqCap/mld_blocks_stringent *WGBS-BSPP data ** Feb2015 data: same WGBS libraries as the Feb2015 SeqCap data. ***Bam folder: /media/Ext12T/DD_Ext12T/MONOD/150209_SN216/BSPP/BAMfiles ***Mld_block_hapInfo folder: /home/kunzhang/CpgMIP/MONOD/Data/150209_SN216/BSPP/mld_block_stringent_hapInfo
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