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== Merge and trim 27bp from 5' end == * Note: the last four digits in sample ID represent the family number less s_5_1_Indx10.txt s_5_2_Indx10.txt s_6_1_Indx10.txt s_6_2_Indx10.txt s_7_1_Indx10.txt s_7_2_Indx10.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM11995-1362<br> less s_5_1_Indx11.txt s_5_2_Indx11.txt s_6_1_Indx11.txt s_6_2_Indx11.txt s_7_1_Indx11.txt s_7_2_Indx11.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM11993-1362<br> less s_5_1_Indx12.txt s_5_2_Indx12.txt s_6_1_Indx12.txt s_6_2_Indx12.txt s_7_1_Indx12.txt s_7_2_Indx12.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM10861-1362<br> less s_5_1_Indx13.txt s_5_2_Indx13.txt s_6_1_Indx13.txt s_6_2_Indx13.txt s_7_1_Indx13.txt s_7_2_Indx13.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM11992-1362<br> less s_5_1_Indx14.txt s_5_2_Indx14.txt s_6_1_Indx14.txt s_6_2_Indx14.txt s_7_1_Indx14.txt s_7_2_Indx14.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM11994-1362<br> less s_5_1_Indx15.txt s_5_2_Indx15.txt s_6_1_Indx15.txt s_6_2_Indx15.txt s_7_1_Indx15.txt s_7_2_Indx15.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM10860-1362<br> less s_5_1_Indx16.txt s_5_2_Indx16.txt s_6_1_Indx16.txt s_6_2_Indx16.txt s_7_1_Indx16.txt s_7_2_Indx16.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12813-1454<br> less s_5_1_Indx17.txt s_5_2_Indx17.txt s_6_1_Indx17.txt s_6_2_Indx17.txt s_7_1_Indx17.txt s_7_2_Indx17.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12802-1454<br> less s_5_1_Indx18.txt s_5_2_Indx18.txt s_6_1_Indx18.txt s_6_2_Indx18.txt s_7_1_Indx18.txt s_7_2_Indx18.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12815-1454<br> less s_5_1_Indx19.txt s_5_2_Indx19.txt s_6_1_Indx19.txt s_6_2_Indx19.txt s_7_1_Indx19.txt s_7_2_Indx19.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12812-1454<br> less s_5_1_Indx20.txt s_5_2_Indx20.txt s_6_1_Indx20.txt s_6_2_Indx20.txt s_7_1_Indx20.txt s_7_2_Indx20.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12814-1454<br> less s_5_1_Indx21.txt s_5_2_Indx21.txt s_6_1_Indx21.txt s_6_2_Indx21.txt s_7_1_Indx21.txt s_7_2_Indx21.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GM12801-1454<br> less s_5_1_Indx22.txt s_5_2_Indx22.txt s_6_1_Indx22.txt s_6_2_Indx22.txt s_7_1_Indx22.txt s_7_2_Indx22.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_1<br> less s_5_1_Indx23.txt s_5_2_Indx23.txt s_6_1_Indx23.txt s_6_2_Indx23.txt s_7_1_Indx23.txt s_7_2_Indx23.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_2<br> less s_5_1_Indx24.txt s_5_2_Indx24.txt s_6_1_Indx24.txt s_6_2_Indx24.txt s_7_1_Indx24.txt s_7_2_Indx24.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_3<br> less s_5_1_Indx25.txt s_5_2_Indx25.txt s_6_1_Indx25.txt s_6_2_Indx25.txt s_7_1_Indx25.txt s_7_2_Indx25.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_4<br> less s_5_1_Indx26.txt s_5_2_Indx26.txt s_6_1_Indx26.txt s_6_2_Indx26.txt s_7_1_Indx26.txt s_7_2_Indx26.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_5<br> less s_5_1_Indx27.txt s_5_2_Indx27.txt s_6_1_Indx27.txt s_6_2_Indx27.txt s_7_1_Indx27.txt s_7_2_Indx27.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_6<br> less s_5_1_Indx28.txt s_5_2_Indx28.txt s_6_1_Indx28.txt s_6_2_Indx28.txt s_7_1_Indx28.txt s_7_2_Indx28.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_7<br> less s_5_1_Indx29.txt s_5_2_Indx29.txt s_6_1_Indx29.txt s_6_2_Indx29.txt s_7_1_Indx29.txt s_7_2_Indx29.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_8<br> less s_5_1_Indx30.txt s_5_2_Indx30.txt s_6_1_Indx30.txt s_6_2_Indx30.txt s_7_1_Indx30.txt s_7_2_Indx30.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/NA12156-1408_9<br> less s_5_1_Indx41.txt s_5_2_Indx41.txt s_6_1_Indx41.txt s_6_2_Indx41.txt s_7_1_Indx41.txt s_7_2_Indx41.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/PGP1iPS-ZYMO<br> less s_5_1_Indx42.txt s_5_2_Indx42.txt s_6_1_Indx42.txt s_6_2_Indx42.txt s_7_1_Indx42.txt s_7_2_Indx42.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/PGP1iPS-IMPRINT<br> less s_5_1_Indx94.txt s_5_2_Indx94.txt s_6_1_Indx94.txt s_6_2_Indx94.txt s_7_1_Indx94.txt s_7_2_Indx94.txt | /home/kunzhang/bin/trimFastq.pl 27 83 >/home/nplongth/Noi_scratch/HL111_BSPP-Hapmap_20111224/GK0281-004<br>
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