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== Sample labeling == {| {{table}} border = 1 | align="center" style="background:#f0f0f0;"|'''LabID''' | align="center" style="background:#f0f0f0;"|'''Well ID''' | align="center" style="background:#f0f0f0;"|'''Indx''' | align="center" style="background:#f0f0f0;"|'''LabID''' | align="center" style="background:#f0f0f0;"|'''Well ID''' | align="center" style="background:#f0f0f0;"|'''Indx''' |- | CAPB016||A01||IndX1||KEBR007A||A04||IndX25 |- | CAPB046||B01||IndX2||KEBR028A||B04||IndX26 |- | CAPB056a||C01||IndX3||KEBR042B||C04||IndX27 |- | CAPL056||D01||IndX4||KEBR040A||D04||IndX28 |- | CAPM007||E01||IndX5||KEBR061A||E04||IndX29 |- | TZHZ018A||F01||IndX6||KEPK003A||F04||IndX30 |- | TZHZ033B||G01||IndX7||KEPK006A||G04||IndX31 |- | TZHZ075A||H01||IndX8||KEPK007A||H04||IndX32 |- | TZHZ214||A02||IndX9||KEPK010A||A05||IndX33 |- | TZHZ221B||B02||IndX10||KEPK016A||B05||IndX34 |- | TZSW067||C02||IndX11||CAPM047||C05||IndX35 |- | TZSW128B||D02||IndX12||CAPM003A||D05||IndX36 |- | TZSW131A||E02||IndX13||CAPM004A||E05||IndX37 |- | TZSW132B||F02||IndX14||CAPM056A||F05||IndX38 |- | TZSW135B||G02||IndX15||ETAM042||G05||IndX39 |- | CAMF013A||H02||IndX16||ETAM071||H05||IndX40 |- | CAFU043||A03||IndX17||ETAM077||A06||IndX41 |- | CAFU042||B03||IndX18||ETAM058||B06||IndX42 |- | CAFU028||C03||IndX19||ETAM065||C06||IndX43 |- | CAMF022A||D03||IndX20||ETSB008||D06||IndX44 |- | CAPB043||E03||IndX21||ETSB027||E06||IndX45 |- | CAPL049||F03||IndX22||ETSB031||F06||IndX46 |- | CAPM001A||G03||IndX23||ETSB035||G06||IndX47 |- | CAPL036||H03||IndX24||ETSB036||H06||IndX48 |}<br> * Merged and trimmed .fastq files, read1 and read2 (PE 100 read, trimmed 27 bp from 5' end) were already stored in: /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx1_* > CAPB016/PennAfrican_Batch1_Indx1.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx2_* > CAPB046/PennAfrican_Batch1_Indx2.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx3_* > CAPB056a/PennAfrican_Batch1_Indx3.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx4_* > CAPL056/PennAfrican_Batch1_Indx4.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx5_* > CAPM007/PennAfrican_Batch1_Indx5.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx6_* > TZHZ018A/PennAfrican_Batch1_Indx6.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx7_* > TZHZ033B/PennAfrican_Batch1_Indx7.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx8_* > TZHZ075A/PennAfrican_Batch1_Indx8.fastq less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx9_* > TZHZ214/PennAfrican_Batch1_Indx9.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx11_* > TZSW067/PennAfrican_Batch1_Indx11.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx12_* > TZSW128B/PennAfrican_Batch1_Indx12.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx13_* > TZSW131A/PennAfrican_Batch1_Indx13.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx14_* > TZSW132B/PennAfrican_Batch1_Indx14.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx15_* > TZSW135B/PennAfrican_Batch1_Indx15.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx16_* > CAMF013A/PennAfrican_Batch1_Indx16.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx17_* > CAFU043/PennAfrican_Batch1_Indx17.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx18_* > CAFU042/PennAfrican_Batch1_Indx18.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx19_* > CAFU028/PennAfrican_Batch1_Indx19.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx20_* > CAMF022A/PennAfrican_Batch1_Indx20.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx21_* > CAPB043/PennAfrican_Batch1_Indx21.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx22_* > CAPL049/PennAfrican_Batch1_Indx22.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx23_* > CAPM001A/PennAfrican_Batch1_Indx23.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx24_* > CAPL036/PennAfrican_Batch1_Indx24.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx25_* > KEBR007A/PennAfrican_Batch1_Indx25.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx26_* > KEBR028A/PennAfrican_Batch1_Indx26.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx27_* > KEBR042B/PennAfrican_Batch1_Indx27.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx28_* > KEBR040A/PennAfrican_Batch1_Indx28.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx29_* > KEBR061A/PennAfrican_Batch1_Indx29.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx30_* > KEPK003A/PennAfrican_Batch1_Indx30.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx31_* > KEPK006A/PennAfrican_Batch1_Indx31.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx32_* > KEPK007A/PennAfrican_Batch1_Indx32.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx33_* > KEPK010A/PennAfrican_Batch1_Indx33.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx34_* > KEPK016A/PennAfrican_Batch1_Indx34.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx35_* > CAPM047/PennAfrican_Batch1_Indx35.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx36_* > CAPM003A/PennAfrican_Batch1_Indx36.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx37_* > CAPM004A/PennAfrican_Batch1_Indx37.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx38_* > CAPM056A/PennAfrican_Batch1_Indx38.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx39_* > ETAM042/PennAfrican_Batch1_Indx39.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx40_* > ETAM071/PennAfrican_Batch1_Indx40.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx41_* > ETAM077/PennAfrican_Batch1_Indx41.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx42_* > ETAM058/PennAfrican_Batch1_Indx42.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx43_* > ETAM065/PennAfrican_Batch1_Indx43.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx44_* > ETSB008/PennAfrican_Batch1_Indx44.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx45_* > ETSB027/PennAfrican_Batch1_Indx45.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx46_* > ETSB031/PennAfrican_Batch1_Indx46.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx47_* > ETSB035/PennAfrican_Batch1_Indx47.fastq #less /home/kunzhang/SeqStore/PennAfrican_Apr2011/Deconvoluted_reads/PennAfrican_Batch1_Indx48_* > ETSB036/PennAfrican_Batch1_Indx48.fastq * There is some problem with PennAfrican_Batch1_Indx8_2.txt data since I can not unzip the file (it showed "gzip: PennAfrican_Batch1_Indx8_2.txt.gz: unexpected end of file" message after I tried to unzip the data to see the problem of this data) * Then I used less command to print out the data in this file and count # of line, I got different number of # of line between PennAfrican_Batch1_Indx8_1.txt and PennAfrican_Batch1_Indx8_2.txt ** PennAfrican_Batch1_Indx8_1.txt: 41,941,796 ** PennAfrican_Batch1_Indx8_2.txt: 40,285,277 * This suggests I can not print out the whole file of PennAfrican_Batch1_Indx8_2.txt
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