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=IPS and Cancer= * Tested DF-6-9-9 and foreskin fibroblast non-sizeselected reads against each other (HL006, s1 and s3) * However, removed clonal reads and reads with SNPs in locations >= 36th base as above * Location: /media/TmpStore1/AG_scratch/Exome/DF-6-9-9/HL006/removeBadLig ** Running mapping/SNP calling scripts now ** Should reduce number of false positives * False positive rate was found to be greatly decreased ** '''POST SPECIFIC RESULTS HERE''' ** Only a few SNPs not at dbSNP locations compared to before ** Need to investigate thoroughly, filter out bad calls * Now running script to generate variant pairs between S3 and S1; looking for a gain of heterozygosity with particular interest
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