Editing
Matt:LabNotes/2015-7-21
(section)
Jump to navigation
Jump to search
Warning:
You are not logged in. Your IP address will be publicly visible if you make any edits. If you
log in
or
create an account
, your edits will be attributed to your username, along with other benefits.
Anti-spam check. Do
not
fill this in!
==mRNA coding sequence== *Find using UCSC Genome Browser 'UCSC Genes' track to pick shortest transcript variant that shares as many exons with other variants ===KIF5C=== *Picked short transcript at 3' end Description: Homo sapiens kinesin family member 5C (KIF5C), mRNA. [http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc002twu.1&hgg_prot=Q59GB8&hgg_chrom=chr2&hgg_start=149856448&hgg_end=149883273&hgg_type=knownGene&db=hg19&hgsid=436113345_HjcgcB8YTBauvgCE5vZwAHBmRlqz mRNA sequence from here] Transcript (Including UTRs) Position: chr2:149,856,449-149,883,273 Size: 26,825 Total Exon Count: 7 Strand: + Coding Region Position: chr2:149,856,881-149,868,190 Size: 11,310 Coding Exon Count: 6 ===PHKB=== *Picked short transcript at 3' end Description: Homo sapiens phosphorylase kinase, beta (PHKB), transcript variant 2, mRNA. [http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc002eew.4&hgg_prot=B3KVX5&hgg_chrom=chr16&hgg_start=47699182&hgg_end=47735434&hgg_type=knownGene&db=hg19&hgsid=436113345_HjcgcB8YTBauvgCE5vZwAHBmRlqz mRNA sequence from here] Transcript (Including UTRs) Position: chr16:47,699,183-47,735,434 Size: 36,252 Total Exon Count: 7 Strand: + Coding Region Position: chr16:47,699,794-47,733,277 Size: 33,484 Coding Exon Count: 7 ===OLFM1=== *Picked 2nd to shortest transcript that has 3' end Description: Homo sapiens olfactomedin 1 (OLFM1), transcript variant 1, mRNA. [http://genome.ucsc.edu/cgi-bin/hgGene?hgg_gene=uc010nar.3&hgg_prot=Q99784&hgg_chrom=chr9&hgg_start=137979816&hgg_end=138013030&hgg_type=knownGene&db=hg19&hgsid=436113345_HjcgcB8YTBauvgCE5vZwAHBmRlqz mRNA sequence from here] Transcript (Including UTRs) Position: chr9:137,979,817-138,013,030 Size: 33,214 Total Exon Count: 6 Strand: + Coding Region Position: chr9:137,979,836-138,012,024 Size: 32,189 Coding Exon Count: 6
Summary:
Please note that all contributions to ZhangLabWiki may be edited, altered, or removed by other contributors. If you do not want your writing to be edited mercilessly, then do not submit it here.
You are also promising us that you wrote this yourself, or copied it from a public domain or similar free resource (see
ZhangLabWiki:Copyrights
for details).
Do not submit copyrighted work without permission!
Cancel
Editing help
(opens in new window)
Navigation menu
Personal tools
Not logged in
Talk
Contributions
Create account
Log in
Namespaces
Page
Discussion
English
Views
Read
Edit
View history
More
Search
Navigation
Main Page
Current events
Recent changes
Random page
Investigators
Matt Cai
Song Chen
Eric Chu
Dinh Diep
Elizabeth Duong
Shicheng Guo
Alan Fung
Daniel Jacobsen
Blue Lake
Huy Lam
Alice Li
Andrew Richards
Brandon Sos
Chris Wei
Yan Wu
Kun Zhang
Tools
What links here
Related changes
Special pages
Page information