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== Mapping Summary == {| {{table}} class = wikitable | align="center" style="width:120px;background:#f0f0f0;"|'''Sample ID''' | align="center" style="background:#f0f0f0;"|'''File ID''' | align="center" style="width:120px;background:#f0f0f0;"|'''Total reads (after COPE)''' | align="center" style="width:120px;background:#f0f0f0;"|'''Total BP''' | align="center" style="width:120px;background:#f0f0f0;"|'''# BP mapped''' | align="center" style="width:120px;background:#f0f0f0;"|'''% BP mapped''' | align="center" style="background:#f0f0f0;"|'''CpG count (10X)''' | align="center" style="background:#f0f0f0;"|'''CpG count (5X)''' | align="center" style="background:#f0f0f0;"|'''CpG count (1X)''' |- | 6-T-1_sRRBS||NP-dgRRBS-6T1-Jul11-16_S1||9,124,296||1,078,904,486||711,246,293||65.92||1,156,962||1,692,494||2,960,140 |- | 6-T-1_dRRBS||sub.NP-dgRRBS-6T1-Jul11-19_S2||9,017,527||994,374,650||584,946,934||58.83||900,920||1,557,354||3,060,748 |} * Mapping rate of dRRBS is slightly lower than sRRBS. Even it's only one library from each, I think it's possible that I did not remove the band between 198-206 enough, so the repetitive sequences still existed in the library. * Base on the same number of read, I did not expect to get more called CpGs from dRRBS than in sRRBS using minimum read depth of 10. The reason is that dRRBS would generate more unique reads than sRRBS, so if the amount of sequencing is not high enough, they would be discarded as the read depth would be lower than 10X. To verify that
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