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==Comparing UMI Capture== *Even though we see a dtrastic difference between bias, we also wanted to determine whether at least the trend of the top most captured targets was conserved between the two probe set. Below shows an R image using gpairs in order to do pairwise comparisons of each of the single cell captures. These were all randomly downsampled to the same number of mapped reads per sample with each point representing the number of UMI for a particular target out of 1981 filtered [[File:cw_20150702_Gpairs_UMI_plot.png|1000px]] *Based on these plots and correlation, we see that there is very low correlation between any two capture regardless of probes used. However, you'll notice that the plots are skewed towards the original probe axis (even with the non-log scale), suggesting that capture occured better using the original probe set
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