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== May 1st, 2015 == * Confirmed with Dr. Zhang that we can process more MDS samples form Dr. Bejar * Need to move forward with capture using HOTSPOTS probes ASAP. I just need to process about 20 samples with HOTSPOTS. I realize that the collaborator might be uncomfortable moving forward with the commercial 5hmC controls at $20/sample because they are planning to assay 10s of samples. But I need to move forward faster with my HOTSPOTS probes capture on differentiation samples. * I have finished mapping the Salk's Human Tissue WGBS data and will be copying them to genome-miner. * I have gotten the Tet proteins from NEB, and I need to perform side by side comparison, perhaps with H1 ESCs so I can compare across different technologies and published datasets. Since we are not going to perform whole genome sequencing with these samples, I will need to capture with my HOTSPOTS probes/or DMR330K first.
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