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===Conclusions=== *Based on ID9 test, >2000bp contigs cut and step size 100bp had best results when using sliding cut method *When comparing sliding cut method and just assembly of recruited sequences and SAG contigs, sliding cut shows ~2-6x increase in sum, and approximately same (sometimes slightly lower) N50 and max **'''Sliding cut method improves recruitment assembly when compared with assembly w/o sliding cut''' *Based on both tests, when using sliding cut, recruitment showed a marked increase in assembly (i.e. higher N50, max, and sum) than original SAG contigs -> shows that recruitment helps with assembly (need to validate if assembly is accurate) **'''Recruitment w/ sliding cut shows improvement compared to SAG''' *However, when comparing sliding cut assembly and just statistics of SAG and recruited contigs (without assembly) = sliding cut shows lower sum/N50/max **Not expected to beat out combination without assembly because there is redundancy in sequencies
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