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==Results== *As a result of the above filtering, we have four different probe files that can be ordered. Each of these are made to target microsatellites from the strand not affected by bisulfite conversion (i.e. the strand that does not contain C's), which might otherwise make data analysis difficult. **ALL bisulfite probes that passed both mapping and alignability filtering: [[File:Hg19_BSPP_probes_noC_20140922.txt]] ***This contains 10,610 probes (Watson strand = 5273 di, 36 tri, 25 tetra; Crick strand = 5210 di, 35 tri, 31 tetra) **ALL regular probes that passed both mapping and alignability filtering: [[File:Hg19_regular_probes_noC_20140922.txt]] ***This contains 8,045 probes (7981 di, 45 tri, 19 tetra) **Subset of bisulfite probes from intersection of good bisulfite/regular probes: [[File:Hg19_BSPP_probes_noC_20140922.intersected.txt]] ***This contains 3529 probes (3508 di, 16 tri, 5 tetra) **Subset of regular probes from instersection of good bisulfite/regular probes: [[File:Hg19_regular_probes_noC_20140922.intersected.txt]] ***This contains 3529 probes (3508 di, 16 tri, 5 tetra) *Dr. Zhang's notes for ordering the probes can be found here <http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/MONOD/2014-8-4#Re-design_of_selector_probes>
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