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Blue:RNA-Seq Libraries:2014
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{| {{table}} | align="center" style="background:#f0f0f0;"|'''Library''' | align="center" style="background:#f0f0f0;"|'''Condition''' | align="center" style="background:#f0f0f0;"|'''RNA Spike-in''' | align="center" style="background:#f0f0f0;"|'''T20-30 (Barcode)''' | align="center" style="background:#f0f0f0;"|'''TSO''' | align="center" style="background:#f0f0f0;"|'''PCR Primers''' | align="center" style="background:#f0f0f0;"|'''Library Processing''' | align="center" style="background:#f0f0f0;"|'''N2/Nextera Index''' | align="center" style="background:#f0f0f0;"|'''Run Type, Minmum BP''' | align="center" style="background:#f0f0f0;"|'''Read 1 Sequencing Primer''' | align="center" style="background:#f0f0f0;"|'''Index Primer''' | align="center" style="background:#f0f0f0;"|'''Read 2 Sequencing Primer''' | align="center" style="background:#f0f0f0;"|'''Seq Lane''' | align="center" style="background:#f0f0f0;"|'''File''' | align="center" style="background:#f0f0f0;"|'''File Location''' |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoRNAseq_1ng-100pg-Mg-UHRR_Mar05]||1ng UHRR; 2min Mg Frag; Enz. PAP 5min||1:2E5 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||1||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx01.txt||140514_HL166 |- | ||1ng UHRR; 2min Mg Frag; Enz. PAP 5min||1:2E5 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||2||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx02.txt||140514_HL166 |- | ||100pg UHRR; 2min Mg Frag; Enz. PAP 5min||1:2E6 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||3||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx03.txt||140514_HL166 |- | ||100pg UHRR; 2min Mg Frag; Enz. PAP 5min||1:2E6 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||4||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx04.txt||140514_HL166 |- | ||NTC; 2min Mg Frag; Enz. PAP 5min||1:2E7 ERCC||T20VN_id11||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||6||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx06.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoRNAseq_1ng-100pg-RIII-UHRR_Mar05]||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||7||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx07.txt||140514_HL166 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||8||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx08.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||9||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx09.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||T20VN_id1||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||10||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx10.txt||140514_HL166 |- | ||NTC; 1min 0.1U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||T20VN_id11||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||12||SE 50+7||STRT-SEQ v3||N2IndSeq||N/A||Lane 5||s_5_1_Indx12.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoRNAseq_10x10pg-Mg-UHRR_Mar05]||10x10pg UHRR; 2min Mg Frag; Enz. PAP 5min||1:2E7 ERCC||T20VN_id1-10||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||5||PE 50+7+8||STRT-SEQ v4||N2IndSeq||N2RevSeq2||Lane 5||s_5_1_Indx05.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoRNAseq_10x10pg-RIII-UHRR_Mar05]||10x10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||T20VN_id1-10||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||11||PE 50+7+8||STRT-SEQ v4||N2IndSeq||N2RevSeq2||Lane 1||s_1_1_Indx11.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoSmartSeq2_1ng-100pg-10pg-RIII-UHRR_Mar05]||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S501/N701||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N701.txt||140514_HL166 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S502/N702||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N702.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S503/N703||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N703.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S504/N704||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N704.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S505/N705||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N705.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S506/N706||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N706.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S507/N707||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N707.txt||140514_HL166 |- | ||NTC; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Smart2_T30VN||Smart2_TSO||IS||Nextera XT||S508/N708||PE 50+7+8||HP10||HP12||HP11||Lane 6||s_6_1_N708.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:03052014 BL_totoQuartzSeq_1ng-100pg-10pg-RIII-UHRR_Mar05]||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S501/N709||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N709.txt||140514_HL166 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S502/N710||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N710.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N711||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N711.txt||140514_HL166 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S504/N712||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N712.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S505/N701||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N701.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S506/N702||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N702.txt||140514_HL166 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S507/N703||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N703.txt||140514_HL166 |- | ||NTC; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S508/N704||PE 50+7+8||HP10||HP12||HP11||Lane 7||s_6_1_N704.txt||140514_HL166 |- | [http://genome-tech.ucsd.edu/LabNotes/index.php/Blue:RNA-Seq_Experiments:01222014 BL_totoRNAseq_10x10pg_0.01-0.1URIII_UHRR_Jan22]||10x10pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||T20VN_id1-10||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||81||PE 50+7+8||STRT-SEQ v4||N2IndSeq||N2RevSeq2||Lane 2, 8||s_2(8)_1_Indx81.txt||140514_HL166 |- | ||10x10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||T20VN_id1-10||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||82||PE 50+7+8||STRT-SEQ v4||N2IndSeq||N2RevSeq2||Lane 2, 8||s_2(8)_1_Indx82.txt||140514_HL166 |- | ||10x10pg UHRR; 1min 0.01U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||T20VN_id1-10||TSO.r06||P1-STRT/PCR_R_N2_idx||n/a||83||PE 50+7+8||STRT-SEQ v4||N2IndSeq||N2RevSeq2||Lane 2, 8||s_2(8)_1_Indx83.txt||140514_HL166 |- | BL-totoSTRTseq-1ng_100pg_10pg_RIII_UHRR-Mar05||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-01||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id01.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E5 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-02||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id02.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-03||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id03.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||100pg UHRR; 1min 0.1U RIII Frag; Affy. PAP 10min||1:2E6 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-04||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id04.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-05||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id05.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-06||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id06.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||10pg UHRR; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-07||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id07.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||NTC; 1min 0.05U RIII Frag; Affy. PAP 4min||1:2E7 ERCC||C1-P1-T31||C1-P1-RNA-TSO||C1-P1-PCR-2||Sten Tagmentation||C1-TN5-08||SE 50+7||C1-P1-PCR-2||C1-TN5-U||N/A||Lane 1,2||s_1_1_StenTn5-id08.txt||/home/kunzhang/seqStore/140701_HL169 |- | BL-totoQuartzSeq-1ng_11_15cycles_UHRR-Jun06||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 11cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N701||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N701.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 11cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N702||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N702.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 13cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N703||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N703.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 13cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N704||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N704.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N705||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N705.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; 1min 0.1U RIII Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N706||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N706.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||NTC; 1min 0.1U RIII Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N707||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N707.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||NTC; 1min 0.1U RIII Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N708||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N708.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; Mg Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N709||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N709.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||1ng UHRR; Mg Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N710||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N7010.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||NTC; Mg Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N711||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N7011.txt||/home/kunzhang/seqStore/140701_HL169 |- | ||NTC; Mg Frag; Affy.PAP, 15cycles||1:2E5 ERCC||Quartz-RT (WTA)||Quartz_Tagging||Quartz Suppression||Nextera XT||S503/N712||SE 50+7||NeteraXT_R1||NeteraXT_i7Ind||n/a||Lane 6||s_6_1_N7012.txt||/home/kunzhang/seqStore/140701_HL169 |- |}
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