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=High Resolution Chromosome Painting Project= [[Daniel Jacobsen|Back to Notebook]] [[Daniel:Experiments-HRCP|Experiment List]] ===2014=== <calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2014/02/01 view=oneyear </calendar> ===2013=== <calendar> name=Daniel:Notebook/HiResChrPaint format=%name/%year-%month-%day date=2013/02/01 view=oneyear </calendar> ==Categories== <div style="column-count:3;-moz-column-count:3;-webkit-column-count:3"> *[[:Category:Probe Mining]] *[[:Category:HRCP]] *[[:Category:Hybridization]] *[[:Category:ULYSIS Label]] *[[:Category:Slide Preparation]] *[[:Category:Size Exclusion]] *[[:Category:EtOH Precipitation]] *[[:Category:qPCR]] *[[:Category:DpnII]] *[[:Category:Lambda Exo]] *[[:Category:ARES Label]] *[[:Category:Microscopy]] *[[:Category:TBE Gel]] *[[:Category:USER]] </div> ==Probe Design== For detailed analysis on probe design, see Dr. Zhang's wiki: [[Kun:LabNotes/HiResChrPaint|Probe Design]] The table below summarizes the first two probe sets, V4 and V6 (adapted from Dr. Zhang's notebook): V6(#probes) V4(#probes) 19,518 [[Media:Feb2012_80k_set_1.txt.gz|Feb2012_80k_set_1.txt]] 16559 2959 20,000 [[Media:Feb2012_80k_set_2.txt.gz|Feb2012_80k_set_2.txt]] 16400 3600 18,850 [[Media:Feb2012_80k_set_3.txt.gz|Feb2012_80k_set_3.txt]] 13000 5850 19,301 [[Media:Feb2012_80k_set_4.txt.gz|Feb2012_80k_set_4.txt]] 13314 5987 or {| class="wikitable" <hiddentext>generated with [[:de:Wikipedia:Helferlein/VBA-Macro for EXCEL tableconversion]] V1.8</hiddentext> |- style="font-size:12pt" align="center" valign="bottom" | align="center" width="65" height="15" | |style="font-weight:bold" width="65" | V6 |style="font-weight:bold" width="65" | V4 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="15" | Set 1 | align="center" | 16559 | align="center" | 2959 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="15" | Set 2 | align="center" | 16400 | align="center" | 3600 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="15" | Set 3 | align="center" | 13000 | align="center" | 5850 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="15" | Set 4 | align="center" | 13314 | align="center" | 5987 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="30" | total probes | align="center" | 59273 | align="center" | 18396 |- style="font-size:12pt" align="center" valign="bottom" |style="font-weight:bold" height="60" | total bp (102/probe, in millions) | align="center" | 6.05 | align="center" | 1.88 |}
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