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===Paired Chi Square Test for Breast Cancer Samples from Same Individuals=== {| {{table}} border=1 | align="center" style="background:#f0f0f0;"|'''Sample Code''' | align="center" style="background:#f0f0f0;"|'''DM CpGs''' | align="center" style="background:#f0f0f0;"|'''CpGs Tested''' | align="center" style="background:#f0f0f0;"|'''Rate''' |- | 5192 Diet Change||189||78819||0.24% |- | 5215 Diet Change||251||43966||0.57% |- | 9123 Diet Change||547||84610||0.65% |- | 9351 No Diet Change||567||82427||0.69% |- | 11306 No Diet Change||739||86460||0.85% |- | 9491 Diet Change||2169||89534||2.42% |- | 13066 No Diet Change||830||33957||2.44% |- | 7292 No Diet Change||4671||90738||5.15% |- | 1373* No Diet Change||4490||50523||8.89% |- | 5359* Diet Change||7005||75668||9.26% |- |} * Outliers in hierarchical clustering 01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 3810 Candidate DMRs: 12333 Rate:0.309 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 183 Candidate DMRs: 10777 Rate:0.017 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 5679 Candidate DMRs: 23044 Rate:0.246 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 3795 Candidate DMRs: 22014 Rate:0.172 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 411 Candidate DMRs: 16051 Rate:0.026 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 430 Candidate DMRs: 15134 Rate:0.028 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 1209 Candidate DMRs: 19802 Rate:0.061 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 550 Candidate DMRs: 15639 Rate:0.035 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 506 Candidate DMRs: 7315 Rate:0.069 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 168 Candidate DMRs: 16196 Rate:0.010 01373A17.methylFreqv01373B09.methylFreq.chisqResults.txt Total DMRs: 4490 Candidate DMRs: 50523 Rate:0.089 05215A18.methylFreqv05215B09.methylFreq.chisqResults.txt Total DMRs: 251 Candidate DMRs: 43966 Rate:0.006 05359A17.methylFreqv05359B09.methylFreq.chisqResults.txt Total DMRs: 7005 Candidate DMRs: 75668 Rate:0.093 07292A17.methylFreqv07292B09.methylFreq.chisqResults.txt Total DMRs: 4671 Candidate DMRs: 90738 Rate:0.051 09123A17.methylFreqv09123B09.methylFreq.chisqResults.txt Total DMRs: 547 Candidate DMRs: 84610 Rate:0.006 09351A17.methylFreqv09351B09.methylFreq.chisqResults.txt Total DMRs: 567 Candidate DMRs: 82427 Rate:0.007 09491A17.methylFreqv09491B09.methylFreq.chisqResults.txt Total DMRs: 2169 Candidate DMRs: 89534 Rate:0.024 11306A18.methylFreqv11306B09.methylFreq.chisqResults.txt Total DMRs: 739 Candidate DMRs: 86460 Rate:0.009 13066A17.methylFreqv13066B09.methylFreq.chisqResults.txt Total DMRs: 830 Candidate DMRs: 33957 Rate:0.024 05192A18.methylFreqv05192B09.methylFreq.chisqResults.txt Total DMRs: 189 Candidate DMRs: 78819 Rate:0.002
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