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Illumina GA/Oligo info
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==Indexes for Library Submission== [https://docs.google.com/spreadsheets/d/1F2L2NpqYCXYwYPk1WQdJDkj3yZKMJftYfeYUHtiXCL4/pubhtml#] {| {{table}} | align="center" style="background:#f0f0f0;"|'''Name in original paper''' | align="center" style="background:#f0f0f0;"|'''Nick-name''' | align="center" style="background:#f0f0f0;"|'''Sequence (5\'->3\')''' | align="center" style="background:#f0f0f0;"|'''Sequence Modification''' | align="center" style="background:#f0f0f0;"|'''Reference''' |- | A_adapter_t||Long Y-adaptor (top)||AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T||3'-Phosphorothioate bond||[1] |- | A_adapter_b||Long Y-adaptor (bottom)||GATCGGAAGAGCGGTTCAGCAGGAATGCCGAGACCGATCTCGTATGCCGTCTTCTGCTTG||None||[1] |- | |- | PE_t_adapter||Regular Y-adaptor (top)||ACACTCTTTCCCTACACGACGCTCTTCCGATC*T||3'-Phosphorothioate bond||[2] |- | PE_b_adapter||Regular Y-adaptor (bottom)||/5Phos/GATCGGAAGAGCGGTTCAGCAGGAATGCCGAG||5'-phosphorylation||[2] |- | |- | PCR_F||Sol. Amp. (Forward)||AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC*T||3'-Phosphorothioate bond||[2] |- | PCR_R||Sol. Amp. (Reverse)||CAAGCAGAAGACGGCATACGAGATCGGTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC*T||3'-Phosphorothioate bond||[2] |- | |- | Syb_FP5||Sol. Quant. (Forward)||ATGATACGGCGACCACCGAG||None||[2] |- | Syb_RP7 ||Sol. Quant. (Reverse)||CAAGCAGAAGACGGCATACGAG||None||[2] | |- | PE_t_N2||Y-adaptor for MmeI ligation (top)||ACACTCTTTCCCTACACGACGCTCTTCCGATCTN*N||3'-Phosphorothioate bond|| |- | PE_N2||Y-adaptor for MmeI ligation (top)||ACACTCTTTCCCTACACGACGCTCTTCCGATC*NN||3'-Phosphorothioate bond|| |- | PE_b_A||Y-adaptor for MmeI ligation (bottom)||/5Phos/AGATCGGAAGAGCGGTTCAGCAGGAATGCCGAG||5'-phosphorylation|| |- | PE_t_Met||bis-seq(Forward)||A/iMe-dC/A/iMe-dC/T/iMe-dC/TTT/iMe-dC//iMe-dC//iMe-dC/TA/iMe-dC/ACGACG/iMe-dC/T/iMe-dC/TT/iMe-dC/CGAT/iMe-dC/*T||3-phosphorothiate, 5'-Methyl|| |- | PE_b_Met||bis-seq (Reverse)||/5Phos/GATCGGAAGAGCGGTT/iMe-dC/AG/iMe-dC/AGGAATG/iMe-dC/CGAG||5'-phosphorylated, 5'-Methyl|| | |- | RC_PE_t_adapter||RC_Regular Y-adaptor with Biotin (top)||/5Biosg/TTTTTTTAGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT||5'-Biotin |- | RC_PE_b_adapter||RC_Regular Y-adaptor with Biotin (bottom)||/5Biosg/TTTTTTTCTCGGCATTCCTGCTGAACCGCTCTTCCGATC||5'-Biotin |- |- | Small RNA Sequencing Primer||Solexa-TSS-Seq||CGACAGGTTCAGAGTTCTACAGTCCGACGATC|| |- | |} *[[Media:Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes.pdf|[1] Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes]] *[[Media:Amplification-free Illumina sequencing-library preparation facilatates improved mapping and assembly of GC biased genomes-supp.pdf|[1] supp]] *[[Media:Improved protocols for the Illumina GA.pdf|[2] Improved protocols for the Illumina GA]] ==Multiplexing Reverse PCR primers== * Barcodes replaced: {| class="wikitable" | align="center" style="background:#f0f0f0;"|'''IndexID''' | align="center" style="background:#f0f0f0;"|'''MutationRate''' | align="center" style="background:#f0f0f0;"|'''Old_sequence''' | align="center" style="background:#f0f0f0;"|'''New_sequence''' |- | Indx03||verybad||GCCTAA||CGACTC |- | Indx09||verybad||CTGATC||GAGCTC |- | Indx32||verybad||CCTTGC||CAATTC |- | Indx50||verybad||AAAGGT||CCGCAC |- | Indx72||verybad||TGGCAG||GGCGAC |- | Indx80||verybad||TTACCA||GGTCTC |} * Commercial barcodes with more than 4 bases similarity with ours: {| class="wikitable" | align="center" style="background:#f0f0f0;"|'''Barcode ID''' | align="center" style="background:#f0f0f0;"|'''Barcode''' | align="center" style="background:#f0f0f0;"|'''Related sequences''' | align="center" style="background:#f0f0f0;"|'''Related sequences ID''' |- | TruSeq_Ind_1||CGTGAT||CGTGAT||Ind1 |- | TruSeq_Ind_2||ACATCG||ACATCG||Ind2 |- | TruSeq_Ind_3||GCCTAA|||| |- | TruSeq_Ind_4||TGGTCA||TGGTCA||Ind4 |- | TruSeq_Ind_5||CACTGT||CACTGT||Ind5 |- | TruSeq_Ind_6||ATTGGC||ATTGGC||Ind6 |- | TruSeq_Ind_7||GATCTG||GATCTG||Ind7 |- | TruSeq_Ind_8||TCAAGT||TCAAGT||Ind8 |- | TruSeq_Ind_9||CTGATC|||| |- | TruSeq_Ind_10||AAGCTA||AAGCTA||Ind10 |- | TruSeq_Ind_11||GTAGCC||GTAGCC||Ind11 |- | TruSeq_Ind_12||TACAAG||TACAAG||Ind12 |- | TruSeq_Ind_13||TTGACT|||| |- | TruSeq_Ind_14||GGAACT||TGAACT,GGCACT,GGATCT,GGAACG||Ind18,Ind43,Ind202,Ind294 |- | TruSeq_Ind_15||TGACAT||TGCCAT||Ind271 |- | TruSeq_Ind_16||GGACGG||GGACGT||Ind54 |- | TruSeq_Ind_18||GCGGAC||TCGGAC,GCGGAA||Ind376,Ind284 |- | TruSeq_Ind_19||TTTCAC||ATTCAC,TCTCAC,TTGCAC,TTTCTC||Ind353,Ind143,Ind150,Ind156 |- | TruSeq_Ind_20||GGCCAC||GGCGAC,GACCAC||Ind72,Ind83 |- | TruSeq_Ind_21||CGAAAC||GGAAAC,CGAGAC,CCAAAC,CGAAGC||Ind193,Ind253,Ind289,Ind293 |- | TruSeq_Ind_22||CGTACG|||| |- | TruSeq_Ind_23||CCACTC||CGACTC,CCAGTC||Ind3,Ind263 |- | TruSeq_Ind_25||ATCAGT||ATCTGT||Ind60 |- | TruSeq_Ind_27||AGGAAT||AGGAAG||Ind15 |- | N701||GCCTTA||TCCTTA,GCCTTT||Ind110,Ind171 |- | N702||AGTACG|||| |- | N703||CTGCCT||CTGGCT||Ind252 |- | N704||TCAGGA||TCACGA||Ind26 |- | N705||GAGTCC||GAGTCC||Ind73 |- | N706||TGCCTA||TGCCTA||Ind93 |- | N707||AGAGAG||GGAGAG,ATAGAG,AGTGAG||Ind47,Ind61,Ind155 |- | N708||TCTCTG||CCTCTG,TCGCTG||Ind364,Ind108 |- | N709||CGTAGC||TGTAGC,CGTAGT,CGAAGC||Ind37,Ind45,Ind293 |- | N710||GCCTCG|||| |- | N711||CCTCTT||CCGCTT,CCTGTT,CCTCTG||Ind196,Ind211,Ind364 |- | N712||CTCTAC||GTCTAC,CTATAC,CTCTAT,CGCTAC,CTCCAC||Ind375,Ind94,Ind200,Ind336,Ind339 |} * CURRENT: Primers master list [[File:ZhangLab_MultiplexingPrimers_BarcodeInfo384_06112014.xlsx]] * Primers master list old [[File:ZhangLab_MultiplexingPrimers_BarcodeInfo384_12212011.xls]] ==Library Free Multiplexing Primers for Dual-Index== * Sequencing primers: ALL CUSTOM PRIMERS (except i5 read primer is the same as standard) **PE Read 1 Sequencing Primer: 5' TGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC (Tm = 79.93 C) **PE Read 2 Sequencing Primer: 5' AGGAGTTCGGCTAGGAACGATGAGCCTCCAAC (Tm = 79.15 C) **Multiplexing Read 1 Sequencing Primer (i7): 5' GTTGGAGGCTCATCGTTCCTAGCCGAACTCCT (Tm = 79.15 C) **Multiplexing Read 2 Sequencing Primer (i5): 5' AATGATACGGCGACCACCGAGATCTACAC (Tm = 74.60 C) {| class="wikitable" | align="center" style="background:#f0f0f0;"|'''Name''' | align="center" style="background:#f0f0f0;"|'''Nick-name''' | align="center" style="background:#f0f0f0;"|'''Barcode''' | align="center" style="background:#f0f0f0;"|'''Barcode sequence sample sheet''' | align="center" style="background:#f0f0f0;"|'''Sequence (5\'->3\')''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | AmpF7.S502||S502||CTCTCTAT||CTCTCTAT||AATGATACGGCGACCACCGAGATCTACACCTCTCTATTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S503||S503||TATCCTCT||TATCCTCT||AATGATACGGCGACCACCGAGATCTACACTATCCTCTTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S505||S505||GTAAGGAG||GTAAGGAG||AATGATACGGCGACCACCGAGATCTACACGTAAGGAGTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S506||S506||ACTGCATA||ACTGCATA||AATGATACGGCGACCACCGAGATCTACACACTGCATATGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S507||S507||AAGGAGTA||AAGGAGTA||AATGATACGGCGACCACCGAGATCTACACAAGGAGTATGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S508||S508||CTAAGCCT||CTAAGCCT||AATGATACGGCGACCACCGAGATCTACACCTAAGCCTTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S510||S510||CGTCTAAT||CGTCTAAT||AATGATACGGCGACCACCGAGATCTACACCGTCTAATTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S511||S511||TCTCTCCG||TCTCTCCG||AATGATACGGCGACCACCGAGATCTACACTCTCTCCGTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S513||S513||TCGACTAG||TCGACTAG||AATGATACGGCGACCACCGAGATCTACACTCGACTAGTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S515||S515||TTCTAGCT||TTCTAGCT||AATGATACGGCGACCACCGAGATCTACACTTCTAGCTTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S516||S516||CCTAGAGT||CCTAGAGT||AATGATACGGCGACCACCGAGATCTACACCCTAGAGTTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S517||S517||GCGTAAGA||GCGTAAGA||AATGATACGGCGACCACCGAGATCTACACGCGTAAGATGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S518||S518||CTATTAAG||CTATTAAG||AATGATACGGCGACCACCGAGATCTACACCTATTAAGTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S520||S520||AAGGCTAT||AAGGCTAT||AATGATACGGCGACCACCGAGATCTACACAAGGCTATTGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S521||S521||GAGCCTTA||GAGCCTTA||AATGATACGGCGACCACCGAGATCTACACGAGCCTTATGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |- | AmpF7.S522||S522||TTATGCGA||TTATGCGA||AATGATACGGCGACCACCGAGATCTACACTTATGCGATGCGGTCAACACTCTCAGATGTTATCGAGGTCCGAC||73 |} {| class="wikitable" | align="center" style="background:#f0f0f0;"|'''Name''' | align="center" style="background:#f0f0f0;"|'''Nick-name''' | align="center" style="background:#f0f0f0;"|'''Barcode''' | align="center" style="background:#f0f0f0;"|'''Barcode sequence sample sheet''' | align="center" style="background:#f0f0f0;"|'''Sequence (5\'->3\')''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | AmpR7.N701||N701||TCGCCTTA||TAAGGCGA||CAAGCAGAAGACGGCATACGAGATTCGCCTTAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N702||N702||CTAGTACG||CGTACTAG||CAAGCAGAAGACGGCATACGAGATCTAGTACGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N703||N703||TTCTGCCT||AGGCAGAA||CAAGCAGAAGACGGCATACGAGATTTCTGCCTAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N704||N704||GCTCAGGA||TCCTGAGC||CAAGCAGAAGACGGCATACGAGATGCTCAGGAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N705||N705||AGGAGTCC||GGACTCCT||CAAGCAGAAGACGGCATACGAGATAGGAGTCCAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N706||N706||CATGCCTA||TAGGCATG||CAAGCAGAAGACGGCATACGAGATCATGCCTAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N707||N707||GTAGAGAG||CTCTCTAC||CAAGCAGAAGACGGCATACGAGATGTAGAGAGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N710||N710||CAGCCTCG||CGAGGCTG||CAAGCAGAAGACGGCATACGAGATCAGCCTCGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N711||N711||TGCCTCTT||AAGAGGCA||CAAGCAGAAGACGGCATACGAGATTGCCTCTTAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N712||N712||TCCTCTAC||GTAGAGGA||CAAGCAGAAGACGGCATACGAGATTCCTCTACAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N714||N714||TCATGAGC||GCTCATGA||CAAGCAGAAGACGGCATACGAGATTCATGAGCAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N715||N715||CCTGAGAT||ATCTCAGG||CAAGCAGAAGACGGCATACGAGATCCTGAGATAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N716||N716||TAGCGAGT||ACTCGCTA||CAAGCAGAAGACGGCATACGAGATTAGCGAGTAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N718||N718||GTAGCTCC||GGAGCTAC||CAAGCAGAAGACGGCATACGAGATGTAGCTCCAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N719||N719||TACTACGC||GCGTAGTA||CAAGCAGAAGACGGCATACGAGATTACTACGCAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N720||N720||AGGCTCCG||CGGAGCCT||CAAGCAGAAGACGGCATACGAGATAGGCTCCGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N721||N721||GCAGCGTA||TACGCTGC||CAAGCAGAAGACGGCATACGAGATGCAGCGTAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N722||N722||CTGCGCAT||ATGCGCAG||CAAGCAGAAGACGGCATACGAGATCTGCGCATAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N723||N723||GAGCGCTA||TAGCGCTC||CAAGCAGAAGACGGCATACGAGATGAGCGCTAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N724||N724||CGCTCAGT||ACTGAGCG||CAAGCAGAAGACGGCATACGAGATCGCTCAGTAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N726||N726||GTCTTAGG||CCTAAGAC||CAAGCAGAAGACGGCATACGAGATGTCTTAGGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N727||N727||ACTGATCG||CGATCAGT||CAAGCAGAAGACGGCATACGAGATACTGATCGAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N728||N728||TAGCTGCA||TGCAGCTA||CAAGCAGAAGACGGCATACGAGATTAGCTGCAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |- | AmpR7.N729||N729||GACGTCGA||TCGACGTC||CAAGCAGAAGACGGCATACGAGATGACGTCGAAGGAGTTCGGCTAGGAACGATGAGCCTCCAAC||64 |} ==Library Free Multiplexing Primers== {| {{table}} | align="center" style="background:#f0f0f0;"|'''Name''' | align="center" style="background:#f0f0f0;"|'''Nick-name''' | align="center" style="background:#f0f0f0;"|'''Sequence (5\'->3\')''' | align="center" style="background:#f0f0f0;"|'''Sequence Modification''' | align="center" style="background:#f0f0f0;"|'''Reference''' |- | Left Probe Linker, No barcode (forward) || AmpF6.3Sol || AATGATACGGCGACCACCGACACTCTCAGATGTTATCGAGGTCCGAC ||None||None |- | Right Probe Linker, Barcode 1: '''CGTGAT''' (reverse)|| AmpR6.3Ind1 || CAAGCAGAAGACGGCATACGAGATCGTGATGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 2: '''ACATCG''' (reverse)|| AmpR6.3Ind2 || CAAGCAGAAGACGGCATACGAGATACATCGGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 3: '''GCCTAA''' (reverse)|| AmpR6.3Ind3 || CAAGCAGAAGACGGCATACGAGATGCCTAAGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 4: '''TGGTCA''' (reverse)|| AmpR6.3Ind4 || CAAGCAGAAGACGGCATACGAGATTGGTCAGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 5: '''CACTGT''' (reverse)|| AmpR6.3Ind5 || CAAGCAGAAGACGGCATACGAGATCACTGTGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 6: '''ATTGGC''' (reverse)|| AmpR6.3Ind6 || CAAGCAGAAGACGGCATACGAGATATTGGCGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 7: '''GATCTG''' (reverse)|| AmpR6.3Ind7 || CAAGCAGAAGACGGCATACGAGATGATCTGGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 8: '''TCAAGT''' (reverse)|| AmpR6.3Ind8 || CAAGCAGAAGACGGCATACGAGATTCAAGTGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 9: '''CTGATC''' (reverse)|| AmpR6.3Ind9 || CAAGCAGAAGACGGCATACGAGATCTGATCGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 10: '''AAGCTA''' (reverse)|| AmpR6.3Ind10 || CAAGCAGAAGACGGCATACGAGATAAGCTAGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 11: '''GTAGCC''' (reverse)|| AmpR6.3Ind11 || CAAGCAGAAGACGGCATACGAGATGTAGCCGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Right Probe Linker, Barcode 12: '''TACAAG''' (reverse)|| AmpR6.3Ind12 || CAAGCAGAAGACGGCATACGAGATTACAAGGCTAGGAACGATGAGCCTCCAAC ||None||None |- | Forward sequencing primer || SolSeqV6.3.2 || ACCGACACTCTCAGATGTTATCGAGGTCCGAC || None || None |- | Reverse sequencing primer || SolSeqV6.3.2r || GCTAGGAACGATGAGCCTCCAAC || None || None |- | Index read primer || AmpR6.3IndSeq || GTTGGAGGCTCATCGTTCCTAGC || None || None |- | Forward extension primer || AmpF6.3SolExt || AATGATACGGCGACCACCGAGATCTACACCACTCTCAGATGTTATCGA|| None || None |- | Forward PCR primer || AmpF6.4Sol || AATGATACGGCGACCACCGAGATCTACACCACTCTCAGATGTTATCGAGGTCCGAC|| None || None |- | Forward sequencing primer || SolSeqV6.3.3 || TACACCACTCTCAGATGTTATCGAGGTCCGAC|| None || None |} * '''The current version of sequencing primers used for Illumina’s PE flowcell''' ** SolSeq6.3.3 (read1) : (5’-TACACCACTCTCAGATGTTATCGAGGTCCGAC -3’) ** SolSeqV6.3.2r (read2) : (5’-GCTAGGAACGATGAGCCTCCAAC-3’) ** AmpR6.3IndSeq (Index read primer) : (5’-GTTGGAGGCTCATCGTTCCTAGC-3’) ** LibFreeIndSeqRev (Index read primer after 2nd strand synthesis) : (5’-CAAGCAGAAGACGGCATACGAGAT-3’) *[[Media:48PlexBarcodePrimers.xls |48-plex primers designed by Dinh.]] *[[Media:Library-free_BarcodeInfo384_designedbyDinh_June16_2011-edit.xls]] ==Multiplex primers for the N2-adaptor== {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequence''' |- | PCR_R.N2Ind1||CAAGCAGAAGACGGCATACGAGATCGTGATCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind2||CAAGCAGAAGACGGCATACGAGATACATCGCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind3||CAAGCAGAAGACGGCATACGAGATGCCTAACTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind4||CAAGCAGAAGACGGCATACGAGATTGGTCACTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind5||CAAGCAGAAGACGGCATACGAGATCACTGTCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind6||CAAGCAGAAGACGGCATACGAGATATTGGCCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind7||CAAGCAGAAGACGGCATACGAGATGATCTGCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind8||CAAGCAGAAGACGGCATACGAGATTCAAGTCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind9||CAAGCAGAAGACGGCATACGAGATCTGATCCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind10||CAAGCAGAAGACGGCATACGAGATAAGCTACTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind11||CAAGCAGAAGACGGCATACGAGATGTAGCCCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_R.N2Ind12||CAAGCAGAAGACGGCATACGAGATTACAAGCTCGGCATTCCTGCTGAACCGCTCTT |- | PCR_Fs||AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTC |- | N2IndSeq||AAGAGCGGTTCAGCAGGAATGCCGAG |- | N2RevSeq(WRONG design)||CTCGGCATTCCTGCTGAACCGCTCTT |- | N2RevSeq2||CTCGGCATTCCTGCTGAACCGCTCTTCCGATCT |- | N2FwdSeq2H (for overloaded flowcells only)||CACTCTTTCCCTACACGACGCTCTTCCGATCTH |- | N2RevSeq2H (for overloaded flowcells only)||TCGGCATTCCTGCTGAACCGCTCTTCCGATCTH | |} ==Nextera Read Primer== {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequence''' |- | Nextera Read 1 Primer||5'-GCCTCCCTCGCGCCATCAGAGATGTGTATAAGAGACAG-3' |- | Nextera Read 2 Primer|| 5'-GCCTTGCCAGCCCGCTCAGAGATGTGTATAAGAGACAG-3' |- | Nextera Index Read Primer|| 5'-CTGTCTCTTATACACATCTCTGAGCGGGCTGGCAAGGCAGACCG-3' | |} ==Nextera Primer== {| {{table}} | align="center" style="background:#f0f0f0;"|'''ID''' | align="center" style="background:#f0f0f0;"|'''Sequence''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | Nextera Primer 1*||AATGATACGGCGACCACCGA||20nt |- | Nextera Primer 2*||CAAGCAGAAGACGGCATACGA||21nt |- | Nextera Adaptor 1*||AATGATACGGCGACCACCGAGATCTACACGCCTCCCTCGCGCCATCAG||48nt |- | Nextera Adaptor 2 (minus bar code)*||CAAGCAGAAGACGGCATACGAGATCGGTCTGCCTTGCCAGCCCGCTCAG||49nt |- | |- | Orange primer||CCTTGCCAGCCCGCTCAG||18nt |- | Blue primer||CCTCCCTCGCGCCATCAG||18nt |- | Short Orange primer||CCTTGCCAGCC||11nt |- | Short Blue primer||CCTCCCTCGCG||11nt |} == Primers for BSPP probes synthesized by Agilent == {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequences''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | pAP1V61U||5’-G*G*G*TCATATCGGTCACTGTU-3’||18 |- | AP1V6||5\'- GTCATATCGGTCACTGTT -3\'||18 |- | AP2V6||5’-/5Phos/CACGGGTAGTGTGTATCCTG-3’||20 |} * * Indicates a phosphorothioate bond == Primers for LC Sciences probe experiment == {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequnces''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | eMIP_CA1_F||TGCCTAGGACCGGATCAACT||20 |- | eMIP_CA1_R||GAGCTTCGGTTCACGCAATG||20 |- | CP-2-FA||GCACGATCCGACGGTAGTGT||20 |- | CP-2-RA||CCGTAATCGGGAAGCTGAAG||20 |- | CP-2-FA.IndSol||CAAGCAGAAGACGGCATACGAGATNNNNNNCGGTCTGCCATCCGACGGTAGTGT||54 |- | CP-2-RA.Sol||AATGATACGGCGACCACCGAGATCTACACGCCTATCGGGAAGCTGAAG||48 |- | Read 1: CP-2-SeqRead1.x||TACACGCCTATCGGGAAGCTGAAG||24 |- | Index Read: CP-2-IndSeq.x||ACACTACCGTCGGATGGCAGACCG ||24 |- | Switch.CP-2-FA.Sol||AATGATACGGCGACCACCGAGATCTACACGCCTATCCGACGGTAGTGT||48 |- | Switch.CP-2-RA.IndSol||CAAGCAGAAGACGGCATACGAGATNNNNNNCGGTCTGCCATCGGGAAGCTGAAG||54 |- | Read 1 CP-2-SeqRead1.y||TACACGCCTATCCGACGGTAGTGT||24 |- | Index Read:CP-2-IndSeq.y||CTTCAGCTTCCCGATGGCAGACCG||24 |}<br> == Primers for LC Sciences library-free protocol == * [[http://genome-tech.ucsd.edu/LabNotes/upload/2/2f/LC_Sciences_DMR_Probes_Design.pdf Scheme of LC Sciences probe design]] {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequences''' | align="center" style="background:#f0f0f0;"|'''Length''' |- | CA-2-FA.Indx7Sol||5’-CAAGCAGAAGACGGCATACGAGATGATCTGCGGTCTGCCATCCGACGGTAGTGT-3’||54 |- | CA-2-FA.Indx45Sol||5'-CAAGCAGAAGACGGCATACGAGATCGTAGTCGGTCTGCCATCCGACGGTAGTGT-3'||54 |- | CA-2-FA.Indx76Sol||5'-CAAGCAGAAGACGGCATACGAGATAATAGGCGGTCTGCCATCCGACGGTAGTGT-3'||54 |- | CA-2-FA.Indx77Sol||5'-CAAGCAGAAGACGGCATACGAGATACCCGTCGGTCTGCCATCCGACGGTAGTGT-3'||54 |- | CA-2-FA.Indx78Sol||5'-CAAGCAGAAGACGGCATACGAGATAACACGCGGTCTGCCATCCGACGGTAGTGT-3'||54 |- | CA-2-RA.Sol||5’-AATGATACGGCGACCACCGAGATCTACACGCCTATCGGGAAGCTGAAG-3’||48 |- | CP-2-SeqRead1.x (Read1)||5’-TACACGCCTATCGGGAAGCTGAAG-3’||24 |- | CP-2-SeqRead2||5'-CGGTCTGCCATCCGACGGTAGTGT-3'||24 |- | CP-2-IndSeq.x (IndexRead)||5’-ACACTACCGTCGGATGGCAGACCG-3’||24 |} == Primers for totoRNAseq protocol == STRT-SEQ Read 1 v3 GATCTAAGCAGTGGTATCAACGCAGAGTACGGG 33nt Tm=71.2 (Kun's) correspond to TSO.r06 used for 5'end totoRNAseq Read 1: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:LabNotes/SingleCell/2012-10-30#Sequencing_primer_design] CACCGAGATCTACACTCTTTCCCTACACGACGTT 34nt Tm=64(IDT) Tm=71.72(Kun's) correspond to TSO.idXX primers used for 5'end totoRNAseq Read 1 v2: CCACCGAGATCTACACTCTTTCCCTACACGACG 33nt Tm=64.5(IDT) Tm=72.04(Kun's) correspond to TSO.r02/TSO.r04 primers used for 5'end RL.T7.IndSeq: AAAAAAAAAAAAAAAAAAAAGCGGGCTGGCAAGG 34nt Tm=60.7(IDT) Tm=68.5(Kun's) correspond to RL.T7.id01-24 primers used for RT step (T20 based primers) == Primers for NEBNext Multiplex Oligos (updated May 08, 2013) == * Reference: [https://www.neb.com/~/media/Catalog/All-Products/33E45F5CD69B497E92C1073F5D551DC7/Datacards%20or%20Manuals/manualE7335.pdf] {| {{table}} | NEBNext adaptor for Illumina:||5´-/5Phos/GATCGGAAGAGCACACGTCTGAACTCCAGTC/ideoxyu/ACACTCTTTCCCT ACACGACGCTCTTCCGATC*T-3´ (loop adaptor, commercially purchased for ultra-low input ligation) |} {| {{table}} | align="center" style="background:#f0f0f0;"|'''Sequence ID''' | align="center" style="background:#f0f0f0;"|'''Sequences''' |- | NEBNext Universal PCR Primer (PCR_F)||5´-AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 1||5´-CAAGCAGAAGACGGCATACGAGATCGTGATGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 2||5´-CAAGCAGAAGACGGCATACGAGATACATCGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 3||5´-CAAGCAGAAGACGGCATACGAGATGCCTAAGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 4||5´-CAAGCAGAAGACGGCATACGAGATTGGTCAGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 5||5´-CAAGCAGAAGACGGCATACGAGATCACTGTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 6||5´-CAAGCAGAAGACGGCATACGAGATATTGGCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3' |- | NEBNext Index 7||5´-CAAGCAGAAGACGGCATACGAGATGATCTGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 8||5´-CAAGCAGAAGACGGCATACGAGATTCAAGTGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 9||5´-CAAGCAGAAGACGGCATACGAGATCTGATCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 10||5´-CAAGCAGAAGACGGCATACGAGATAAGCTAGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 11||5´-CAAGCAGAAGACGGCATACGAGATGTAGCCGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | NEBNext Index 12||5´-CAAGCAGAAGACGGCATACGAGATTACAAGGTGACTGGAGTTCAGACGTGTGCTCTTCCGATC-s-T-3´ |- | '''HP1 -> updated to HP6 (read1)'''|| |- | '''NEBNextRevSeq2 (read2)'''||5' -GTGACTGGAGTTCAGACGTGTGCTCTTCCGATCT- 3' |- | '''NEBNextIndSeq (index read)'''||5' -GAAGAGCACACGTCTGAACTCCAGTCAC- 3' |} * '''-s-''' = phosphorothioate bond * May 2013, more NEBNext Index primers (Index 9-32) in 96-well plate were ordered. The new primers do not have phosphorothioate bond at -s-T-3´ end as the ones from NEB kit. * Updated [[Media:ZhangLab_NEBNext_MultiplexingPrimers_BarcodeInfo_06142013.xlsx| ZhangLab_NEBNext_MultiplexingPrimers_BarcodeInfo_06142013]] ==HiTSFLIP Sequencing Primer== *HiTSFLIP SEQ 1 5'GATCACGACGCTCTTCCGATCTCTACACTCTTTCCCTA *Multiplexing Index Read Sequencing Primer 5' GATCGGAAGAGCACACGTCTGAACTCCAGTCAC == Adaptors/Primers for RRBS experiment, (updated Apr 24, 2014) == '''Barcoded adaptors'''<br> {| {{table}} | align="center" style="background:#f0f0f0;"|'''Name in Illumina TrueSeq kit''' | align="center" style="background:#f0f0f0;"|'''Sequences (5'-->3')''' |- | TruSeq Universal Adapter||5'- AATGATACGGCGACCACCGAGATCTACACTCTTTCCCTACACGACGCTCTTCCGATCT -3' |- | TruSeq Adapter, Index XX||5'- GATCGGAAGAGCACACGTCTGAACTCCAGTCAC<u>NNNNNN</u>ATCTCGTATGCCGTCTTCTGCTTG -3' |} * Note: ** TruSeq adaptor barcode Index 1-12 are the same as Zhanglab's Index 1-96, but Index13-27 are different as list below. ** Index numbers 17, 24, and 26 are reserved by Illumina. {| {{table}} | align="center" style="width:120px;background:#f0f0f0;"|'''Index''' | align="center" style="width:140px;background:#f0f0f0;"|'''Barcodes''' |- | TruSeq_Ind13||AGTCAA |- | TruSeq_Ind14||AGTTCC |- | TruSeq_Ind15||ATGTCA |- | TruSeq_Ind16||CCGTCC |- | TruSeq_Ind18||GTCCGC |- | TruSeq_Ind19||GTGAAA |- | TruSeq_Ind20||GTGGCC |- | TruSeq_Ind21||GTTTCG |- | TruSeq_Ind22||CGTACG |- | TruSeq_Ind23||GAGTGG |- | TruSeq_Ind25||ACTGAT |- | TruSeq_Ind27||ATTCCT |} ''' PCR primers''' {| {{table}} | TruS_F||5'- AATGATACGGCGACCACCGAGATC -3'||Tm = 67.1 C |- | TruS_R||5'- CAAGCAGAAGACGGCATACGAGAT -3'||Tm = 65.5 C |} '''Read1:''' HP10<br> '''Index read:'''HP12<br> '''Read2:''' HP11 ==Sten's EZ-Tn5 protocol related primers== C1-P1-PCR-2 /5Biosg/GAATGATACGGCGACCACCGAT C1-TN5-U /5Phos/CTGTCTCTTATACACATCTGACGC {| {{table}} | align="center" style="background:#f0f0f0;"|'''Order''' | align="center" style="background:#f0f0f0;"|'''Barcode''' | align="center" style="background:#f0f0f0;"|'''Name''' | align="center" style="background:#f0f0f0;"|'''Sequence''' |- | 1||CGTCTAAT||C1-TN5-1||CAAGCAGAAGACGGCATACGACGTCTAATGCGTCAGATGTGTATAAGAGACAG |- | 2||AGACTCGT||C1-TN5-2||CAAGCAGAAGACGGCATACGAAGACTCGTGCGTCAGATGTGTATAAGAGACAG |- | 3||GCACGTCA||C1-TN5-3||CAAGCAGAAGACGGCATACGAGCACGTCAGCGTCAGATGTGTATAAGAGACAG |- | 4||TCAACGAC||C1-TN5-4||CAAGCAGAAGACGGCATACGATCAACGACGCGTCAGATGTGTATAAGAGACAG |- | 5||ATTTAGCG||C1-TN5-5||CAAGCAGAAGACGGCATACGAATTTAGCGGCGTCAGATGTGTATAAGAGACAG |- | 6||ATACAGAC||C1-TN5-6||CAAGCAGAAGACGGCATACGAATACAGACGCGTCAGATGTGTATAAGAGACAG |- | 7||TGCGTAGG||C1-TN5-7||CAAGCAGAAGACGGCATACGATGCGTAGGGCGTCAGATGTGTATAAGAGACAG |- | 8||TGGAGCTC||C1-TN5-8||CAAGCAGAAGACGGCATACGATGGAGCTCGCGTCAGATGTGTATAAGAGACAG |- | 9||TGAATACC||C1-TN5-9||CAAGCAGAAGACGGCATACGATGAATACCGCGTCAGATGTGTATAAGAGACAG |- | 10||TCTCACAC||C1-TN5-10||CAAGCAGAAGACGGCATACGATCTCACACGCGTCAGATGTGTATAAGAGACAG |- | 11||TACTGGTA||C1-TN5-11||CAAGCAGAAGACGGCATACGATACTGGTAGCGTCAGATGTGTATAAGAGACAG |- | 12||ACGATAGG||C1-TN5-12||CAAGCAGAAGACGGCATACGAACGATAGGGCGTCAGATGTGTATAAGAGACAG |- | 13||GATGTCGA||C1-TN5-13||CAAGCAGAAGACGGCATACGAGATGTCGAGCGTCAGATGTGTATAAGAGACAG |- | 14||TTACGGGT||C1-TN5-14||CAAGCAGAAGACGGCATACGATTACGGGTGCGTCAGATGTGTATAAGAGACAG |- | 15||CACAGCAT||C1-TN5-15||CAAGCAGAAGACGGCATACGACACAGCATGCGTCAGATGTGTATAAGAGACAG |- | 16||CTTTGACA||C1-TN5-16||CAAGCAGAAGACGGCATACGACTTTGACAGCGTCAGATGTGTATAAGAGACAG |- | 17||CCTTCAAG||C1-TN5-17||CAAGCAGAAGACGGCATACGACCTTCAAGGCGTCAGATGTGTATAAGAGACAG |- | 18||GAGTCCTG||C1-TN5-18||CAAGCAGAAGACGGCATACGAGAGTCCTGGCGTCAGATGTGTATAAGAGACAG |- | 19||CACACTGA||C1-TN5-19||CAAGCAGAAGACGGCATACGACACACTGAGCGTCAGATGTGTATAAGAGACAG |- | 20||GTTACAGG||C1-TN5-20||CAAGCAGAAGACGGCATACGAGTTACAGGGCGTCAGATGTGTATAAGAGACAG |- | 21||GGACCTTT||C1-TN5-21||CAAGCAGAAGACGGCATACGAGGACCTTTGCGTCAGATGTGTATAAGAGACAG |- | 22||TTCCGTTC||C1-TN5-22||CAAGCAGAAGACGGCATACGATTCCGTTCGCGTCAGATGTGTATAAGAGACAG |- | 23||ACTGTTTG||C1-TN5-23||CAAGCAGAAGACGGCATACGAACTGTTTGGCGTCAGATGTGTATAAGAGACAG |- | 24||AAGTGGCT||C1-TN5-24||CAAGCAGAAGACGGCATACGAAAGTGGCTGCGTCAGATGTGTATAAGAGACAG |- | 25||CTGTACAA||C1-TN5-25||CAAGCAGAAGACGGCATACGACTGTACAAGCGTCAGATGTGTATAAGAGACAG |- | 26||CGCAAAGT||C1-TN5-26||CAAGCAGAAGACGGCATACGACGCAAAGTGCGTCAGATGTGTATAAGAGACAG |- | 27||GTGCATGA||C1-TN5-27||CAAGCAGAAGACGGCATACGAGTGCATGAGCGTCAGATGTGTATAAGAGACAG |- | 28||GTCATTAG||C1-TN5-28||CAAGCAGAAGACGGCATACGAGTCATTAGGCGTCAGATGTGTATAAGAGACAG |- | 29||AGCTCCTT||C1-TN5-29||CAAGCAGAAGACGGCATACGAAGCTCCTTGCGTCAGATGTGTATAAGAGACAG |- | 30||TCACCCGA||C1-TN5-30||CAAGCAGAAGACGGCATACGATCACCCGAGCGTCAGATGTGTATAAGAGACAG |- | 31||GTTGCCAC||C1-TN5-31||CAAGCAGAAGACGGCATACGAGTTGCCACGCGTCAGATGTGTATAAGAGACAG |- | 32||TGTACCAA||C1-TN5-32||CAAGCAGAAGACGGCATACGATGTACCAAGCGTCAGATGTGTATAAGAGACAG |- | 33||AACGAGGT||C1-TN5-33||CAAGCAGAAGACGGCATACGAAACGAGGTGCGTCAGATGTGTATAAGAGACAG |- | 34||AGCCACCA||C1-TN5-34||CAAGCAGAAGACGGCATACGAAGCCACCAGCGTCAGATGTGTATAAGAGACAG |- | 35||GGTAATCA||C1-TN5-35||CAAGCAGAAGACGGCATACGAGGTAATCAGCGTCAGATGTGTATAAGAGACAG |- | 36||CCAGTCCA||C1-TN5-36||CAAGCAGAAGACGGCATACGACCAGTCCAGCGTCAGATGTGTATAAGAGACAG |- | 37||ACCTCAGC||C1-TN5-37||CAAGCAGAAGACGGCATACGAACCTCAGCGCGTCAGATGTGTATAAGAGACAG |- | 38||GGTGGACT||C1-TN5-38||CAAGCAGAAGACGGCATACGAGGTGGACTGCGTCAGATGTGTATAAGAGACAG |- | 39||GACAAACC||C1-TN5-39||CAAGCAGAAGACGGCATACGAGACAAACCGCGTCAGATGTGTATAAGAGACAG |- | 40||TAACTCCG||C1-TN5-40||CAAGCAGAAGACGGCATACGATAACTCCGGCGTCAGATGTGTATAAGAGACAG |- | 41||ACACCGTG||C1-TN5-41||CAAGCAGAAGACGGCATACGAACACCGTGGCGTCAGATGTGTATAAGAGACAG |- | 42||GTAGAACG||C1-TN5-42||CAAGCAGAAGACGGCATACGAGTAGAACGGCGTCAGATGTGTATAAGAGACAG |- | 43||GGATTGAC||C1-TN5-43||CAAGCAGAAGACGGCATACGAGGATTGACGCGTCAGATGTGTATAAGAGACAG |- | 44||ACGTATCC||C1-TN5-44||CAAGCAGAAGACGGCATACGAACGTATCCGCGTCAGATGTGTATAAGAGACAG |- | 45||TTCGGAAA||C1-TN5-45||CAAGCAGAAGACGGCATACGATTCGGAAAGCGTCAGATGTGTATAAGAGACAG |- | 46||AGTTGTGT||C1-TN5-46||CAAGCAGAAGACGGCATACGAAGTTGTGTGCGTCAGATGTGTATAAGAGACAG |- | 47||AAGCACAT||C1-TN5-47||CAAGCAGAAGACGGCATACGAAAGCACATGCGTCAGATGTGTATAAGAGACAG |- | 48||CTGTCATT||C1-TN5-48||CAAGCAGAAGACGGCATACGACTGTCATTGCGTCAGATGTGTATAAGAGACAG |- | 49||GTCCTATA||C1-TN5-49||CAAGCAGAAGACGGCATACGAGTCCTATAGCGTCAGATGTGTATAAGAGACAG |- | 50||CTACGCTG||C1-TN5-50||CAAGCAGAAGACGGCATACGACTACGCTGGCGTCAGATGTGTATAAGAGACAG |- | 51||GGGATTGT||C1-TN5-51||CAAGCAGAAGACGGCATACGAGGGATTGTGCGTCAGATGTGTATAAGAGACAG |- | 52||TGATGTAG||C1-TN5-52||CAAGCAGAAGACGGCATACGATGATGTAGGCGTCAGATGTGTATAAGAGACAG |- | 53||TTCGCTGT||C1-TN5-53||CAAGCAGAAGACGGCATACGATTCGCTGTGCGTCAGATGTGTATAAGAGACAG |- | 54||GAAGACTT||C1-TN5-54||CAAGCAGAAGACGGCATACGAGAAGACTTGCGTCAGATGTGTATAAGAGACAG |- | 55||TCTGGGCA||C1-TN5-55||CAAGCAGAAGACGGCATACGATCTGGGCAGCGTCAGATGTGTATAAGAGACAG |- | 56||CAACTAGA||C1-TN5-56||CAAGCAGAAGACGGCATACGACAACTAGAGCGTCAGATGTGTATAAGAGACAG |- | 57||CCATGGGA||C1-TN5-57||CAAGCAGAAGACGGCATACGACCATGGGAGCGTCAGATGTGTATAAGAGACAG |- | 58||ATGCGACG||C1-TN5-58||CAAGCAGAAGACGGCATACGAATGCGACGGCGTCAGATGTGTATAAGAGACAG |- | 59||GAGGGTAG||C1-TN5-59||CAAGCAGAAGACGGCATACGAGAGGGTAGGCGTCAGATGTGTATAAGAGACAG |- | 60||CGGGTGAA||C1-TN5-60||CAAGCAGAAGACGGCATACGACGGGTGAAGCGTCAGATGTGTATAAGAGACAG |- | 61||GCCATCTT||C1-TN5-61||CAAGCAGAAGACGGCATACGAGCCATCTTGCGTCAGATGTGTATAAGAGACAG |- | 62||GCATAATC||C1-TN5-62||CAAGCAGAAGACGGCATACGAGCATAATCGCGTCAGATGTGTATAAGAGACAG |- | 63||TCTATGGT||C1-TN5-63||CAAGCAGAAGACGGCATACGATCTATGGTGCGTCAGATGTGTATAAGAGACAG |- | 64||AGGACTTA||C1-TN5-64||CAAGCAGAAGACGGCATACGAAGGACTTAGCGTCAGATGTGTATAAGAGACAG |- | 65||CGTGATTC||C1-TN5-65||CAAGCAGAAGACGGCATACGACGTGATTCGCGTCAGATGTGTATAAGAGACAG |- | 66||ACTAGCGA||C1-TN5-66||CAAGCAGAAGACGGCATACGAACTAGCGAGCGTCAGATGTGTATAAGAGACAG |- | 67||GTAACTCC||C1-TN5-67||CAAGCAGAAGACGGCATACGAGTAACTCCGCGTCAGATGTGTATAAGAGACAG |- | 68||CGGAAGTG||C1-TN5-68||CAAGCAGAAGACGGCATACGACGGAAGTGGCGTCAGATGTGTATAAGAGACAG |- | 69||CCGAGTAC||C1-TN5-69||CAAGCAGAAGACGGCATACGACCGAGTACGCGTCAGATGTGTATAAGAGACAG |- | 70||GACGCAAT||C1-TN5-70||CAAGCAGAAGACGGCATACGAGACGCAATGCGTCAGATGTGTATAAGAGACAG |- | 71||ACCTGGAG||C1-TN5-71||CAAGCAGAAGACGGCATACGAACCTGGAGGCGTCAGATGTGTATAAGAGACAG |- | 72||CATGGGTT||C1-TN5-72||CAAGCAGAAGACGGCATACGACATGGGTTGCGTCAGATGTGTATAAGAGACAG |- | 73||ATTCCTAG||C1-TN5-73||CAAGCAGAAGACGGCATACGAATTCCTAGGCGTCAGATGTGTATAAGAGACAG |- | 74||AATCATGC||C1-TN5-74||CAAGCAGAAGACGGCATACGAAATCATGCGCGTCAGATGTGTATAAGAGACAG |- | 75||GCTTCCCT||C1-TN5-75||CAAGCAGAAGACGGCATACGAGCTTCCCTGCGTCAGATGTGTATAAGAGACAG |- | 76||AGGTAAAG||C1-TN5-76||CAAGCAGAAGACGGCATACGAAGGTAAAGGCGTCAGATGTGTATAAGAGACAG |- | 77||CCACAACT||C1-TN5-77||CAAGCAGAAGACGGCATACGACCACAACTGCGTCAGATGTGTATAAGAGACAG |- | 78||ACAGGCAT||C1-TN5-78||CAAGCAGAAGACGGCATACGAACAGGCATGCGTCAGATGTGTATAAGAGACAG |- | 79||TTTGTGTC||C1-TN5-79||CAAGCAGAAGACGGCATACGATTTGTGTCGCGTCAGATGTGTATAAGAGACAG |- | 80||TGAGCATA||C1-TN5-80||CAAGCAGAAGACGGCATACGATGAGCATAGCGTCAGATGTGTATAAGAGACAG |- | 81||TTAGACGC||C1-TN5-81||CAAGCAGAAGACGGCATACGATTAGACGCGCGTCAGATGTGTATAAGAGACAG |- | 82||CGCTTGCT||C1-TN5-82||CAAGCAGAAGACGGCATACGACGCTTGCTGCGTCAGATGTGTATAAGAGACAG |- | 83||AGTCTGCC||C1-TN5-83||CAAGCAGAAGACGGCATACGAAGTCTGCCGCGTCAGATGTGTATAAGAGACAG |- | 84||CATAGTCG||C1-TN5-84||CAAGCAGAAGACGGCATACGACATAGTCGGCGTCAGATGTGTATAAGAGACAG |- | 85||TCTTGCTG||C1-TN5-85||CAAGCAGAAGACGGCATACGATCTTGCTGGCGTCAGATGTGTATAAGAGACAG |- | 86||GGGACAAC||C1-TN5-86||CAAGCAGAAGACGGCATACGAGGGACAACGCGTCAGATGTGTATAAGAGACAG |- | 87||ATATTCCC||C1-TN5-87||CAAGCAGAAGACGGCATACGAATATTCCCGCGTCAGATGTGTATAAGAGACAG |- | 88||TGTTAAGC||C1-TN5-88||CAAGCAGAAGACGGCATACGATGTTAAGCGCGTCAGATGTGTATAAGAGACAG |- | 89||TACGCCTC||C1-TN5-89||CAAGCAGAAGACGGCATACGATACGCCTCGCGTCAGATGTGTATAAGAGACAG |- | 90||CACTTATC||C1-TN5-90||CAAGCAGAAGACGGCATACGACACTTATCGCGTCAGATGTGTATAAGAGACAG |- | 91||ACCGCTAA||C1-TN5-91||CAAGCAGAAGACGGCATACGAACCGCTAAGCGTCAGATGTGTATAAGAGACAG |- | 92||TAAGGTCC||C1-TN5-92||CAAGCAGAAGACGGCATACGATAAGGTCCGCGTCAGATGTGTATAAGAGACAG |- | 93||GAAAGGTG||C1-TN5-93||CAAGCAGAAGACGGCATACGAGAAAGGTGGCGTCAGATGTGTATAAGAGACAG |- | 94||ACGTTGTA||C1-TN5-94||CAAGCAGAAGACGGCATACGAACGTTGTAGCGTCAGATGTGTATAAGAGACAG |- | 95||GCAGAGAA||C1-TN5-95||CAAGCAGAAGACGGCATACGAGCAGAGAAGCGTCAGATGTGTATAAGAGACAG |- | 96||GCATTTGG||C1-TN5-96||CAAGCAGAAGACGGCATACGAGCATTTGGGCGTCAGATGTGTATAAGAGACAG |}
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Investigators
Matt Cai
Song Chen
Eric Chu
Dinh Diep
Elizabeth Duong
Shicheng Guo
Alan Fung
Daniel Jacobsen
Blue Lake
Huy Lam
Alice Li
Andrew Richards
Brandon Sos
Chris Wei
Yan Wu
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