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==Sample sent out== 20080812 to Yuan Gao: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-8-4] IMB90_iPS: 120nM x 20ul Hybrid_1: 97nM x 20ul 20080813 to Covaris: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-8-12] IMB90_iPS: 35ng/ul x 30ul Hybrid_1: 36ng/ul x 30ul 20080902 to Yuan Gao: Hybrid_1_Covaris_sequencing_Library: 27.8ng/ul (187nM) x 15ul. refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-8-26] BJ, 17.4ng/ul (117nM) x 15ul. refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-8-15] BJ_iPS_11, 18.6ng/ul (125nM) x 25ul BJ_iPS_12, 32.7ng/ul (220nM) x 25ul Hybrid_2, 28.3ng/ul (190nM) x 25ul 20080915 to Bing Ren: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-9-12] No_1(BJ): 17.2ng/ul (104nM) x 15ul No_9(Hybrid_2): 18.6ng/ul (112nM) x 15ul 20080917 to Yuan Gao: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-9-5] hFib2, 27.1ng/ul (164nM) x 30ul hFib2_iPS4, 22.2ng/ul (134nM) x 30ul HUES_63, 30.8ng/ul (186nM) x 30ul IMR90, 31.1ng/ul (189nM) x 30ul 20080917 to Agencourt: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2008-9-4] Captured PCR_BJ (96-well plasmids) Sequencing library_BJ (96-well plasmids) 20080924 to Yuan Gao:refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/ASE/2008-9-22] G2: 26.1ng/ul (132nM) x 15ul 2B: 26.8ng/ul (140nM) x 15ul 3B: 40.7ng/ul (213nM) x 15ul H1: 33.4ng/ul (175nM) x 15ul H2: 43.3ng/ul (227nM) x 15ul 20091026 to Yuan Gao: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/ExonomeSeq/2009-1-19] short probe: 15.3ng/ul (36nM) x 15ul; long probe (high con.): 18.7ng/ul (30nM) x 15ul; 20090206 to Kun: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-1-13] and [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-1-22] BJ: 75.4nM x 15ul; Hybrid_1: 87.6nM x 15ul; PGP1_F: 106nM x 15ul; HUES12: 74.9nM x 15ul; PGP1_iPS1: 90.3nM x 15ul; PGP1_L: 77.6nM x 15ul; PGP3_L: 80.9nM x 15ul; PGP9_L: 96.9nM x 15ul; 200905 to Yuan Gao: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-5-20] NA21070*1 100406 captured targets: 25.3ng/ul (96nM) x 15ul; NA21070*1 100406 normalized captured targets: 23.1ng/ul (87nM) x 15ul; PGP2_052909A: 111nM x 15ul;refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/ExonomeSeq/2009-5-29] PGP3_052909A: 126nM x 15ul. 20090608 to BioGem: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-5-29] DF6-9-9_P16(4): 11nM x 10ul x 2 lanes; foreskin: 15nM x 10ul x 1lane. 20090610 to Zhen Ye: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-6-4] NA21070*1_100406_97k 21.2nM x 14ul; DF6-9-9_P16(4)_30k 21.2nM x 14ul; foreskin_30k 21.2nM x 14ul; 20090615 to Yuan Gao: the following 3 samples are captured targets of mouse DNA.refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/AlanFung:LabNotes/Capturing/Ms_Meth/EoH;E4H;E24H/2009-6-9] E24H 6.56 ng/ul * 46uL (26nM) E4H 19.6 ng/ul * 40uL (40nM) EoH 43.53 ng/ul * 75uL (88nM) 20090618 to Zhen Ye: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/ASE/2009-6-10] Hybrid_1: 4.3ng/ul (37nM) x 5ul BJ: 7.2ng/ul (62nM) x 5ul The above 2 samples for end-sequencing. 20090625 to Agencourt: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-6-22] 3 96-well plates containing the three blunt clones to Agencourt on 09-06-25. one 96-well plate containing the clones from DMNT3B and MMP9 together with the forward and reverse primers to Agencourt on 09-06-25. 20090629 to Agencourt: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-6-22] one 96-well palte containg the clones from LSP1 and MATN4 together with the forward and reverse primers to Agencourt on 09-06-29. 20090705 to Agencourt: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-7-1] two 96-well plates for ASM validation for regions overlap r2 and SNP. 20090709 to Genewiz for fuzzl-methylated gene ASE validation: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-7-2] 20090713 to Genewiz for fuzzl-methylated gene ASE validation: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-7-2] 20090714 to Genewiz for genomic alleotype validatioon of GLIPR1L2 on GM12863,64,72~75:refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-7-14] 20090831 to Agencourt: refer to LabNotes on [http://genome-tech.ucsd.edu/LabNotes/index.php/Jie:LabNotes/CpgSeq/2009-7-27] Four plates for cell type and individual dependent ASM validation: rs6061990_PGP3L_PGP9L_rs3746459_BJ; MATN4_PGP1F_PGP1iPS_rs10846023_BJ; DNMT3B_PGP3L_PGP9L_rs34206253_PGP1L; rs8128908_PGP1L_PGP1F_rs34206253_PGP1F_MMP9_PGP1L
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