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*[[Kun:LabNotes/ASE|Allele-specific Expression]] *[[Kun:LabNotes/CpgSeq|Targeted bisulfite sequencing]] *[[Kun:LabNotes/ExonomeSeq|Human exome resequencing]] *[[Kun:LabNotes/Haplotyping|Human haplotyping]] *[[Kun:LabNotes/GenomeSeq|Genome sequencing]] *[[Kun:LabNotes/SingleCellExpr|Single-cell transcriptomics]] *[[Kun:LabNotes/HiResChrPaint|Hi-resolution chromosome painting]] *[[Kun:LabNotes/inSituSeq|in situ Sequencing]] *[[Kun:LabNotes/MONOD|MONOD]] __NOTOC__ ===Oligonucleotide libraries=== ====ASE==== #eSNP84k:[[Media:Amplifiable_MIP_design_KZ_v4.doc|CircPlex V4]] #CES22k:[[Media:Amplifiable_MIP_design_KZ_v6.doc|CircPlex V6]] #CES27k:[[Media:Amplifiable_MIP_design_KZ_v6.doc|CircPlex V6]]; [[Kun:LabNotes/ASE|Design]] #CES27k9bp:[[Media:Amplifiable_MIP_design_KZ_v9.doc|CircPlex V9]]; [[Kun:LabNotes/ASE|Design]] #CES18bp:[[Media:Amplifiable_MIP_design_KZ_v11.doc|CircPlex V11]]; [[Kun:LabNotes/ASE|Design]] ====Exon capture==== #E55kv1:[[Media:CircPlex_design_V7.doc|CircPlex V7]];[[Kun:LabNotes/ExonomeSeq/2007-11-15|Design]] #Cosmic3760:[[Media:Amplifiable_MIP_design_KZ_v8.doc|CircPlex V8]];[[Kun:LabNotes/ExonomeSeq/2007-12-21|Design]] #E27kv2:[[Media:CircPlex_design_V10_DpnII.doc|CircPlex V10 (Dpn II)]];[[Media:CircPlex_design_V10_nicking.doc|CircPlex V10(Nicking)]] #Dec08:[[Media:CircPlex_design_VDec08.doc|CircPlex VDec08]];[[Kun:LabNotes/ExonomeSeq|Design]];[[Media:Jan09_probe_allocation.xlsx|Jan09 order allocation]];[http://genome-tech.ucsd.edu/LabNotes/upload/large_files/Exome_Probe_info.txt Detailed probe information] ##[[Media:RefExonJan09-1.xlsx.gz|Jan09 Chip 1]] OLID 0225271 ##[[Media:RefExonJan09-2.xlsx.gz|Jan09 Chip 2]] OLID 0225281 ##[[Media:RefExonJan09-3.xlsx.gz|Jan09 Chip 3]] OLID 0225291 ##[[Media:RefExonJan09-4.xlsx.gz|Jan09 Chip 4]] OLID 0225301 ##[[Media:RefExonJan09-5.xlsx.gz|Jan09 Chip 5]] OLID 0225311 #Mar09 ##[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/ExonomeSeq#March-09_order Mar09-55k] OLID 0232611 #Apr09 ##Jan09-6 (binning set) OLID 0237871 ##Jan09-7 (binning set) OLID-0237861 #Aug09 ##Jan09-8 (binning set) OLID 0248471 ##Jan09-9 (binning set) OLID-0253651 ====BSPP==== #Cpg28k:[[Media:Amplifiable_MIP_design_KZ_v8.doc|CircPlex V8]]; [[Kun:LabNotes/CpgSeq|Design]] #[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Agilent_probes.2C_V2_.28April_2008.29 Cpg30k] #[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Agilent_probes.2C_V3_.28Feb._2009.29 cpgJan09] ##CpgJan09A OLID 0231531 ##CpgJan09B OLID 0232541 #[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Mouse_probes_.28Apr._2009.29 CpgMm9A] OLID 0236741 #DMR220k: [[Kun:LabNotes/CpgSeq#Human_DMR_220k_probe_set_.28May_2010.29|Information]] ====Mix set==== #[[Media:ZhangSept09.txt|Sept09, 55k, 140mers]] ##[[Kun:LabNotes/ExonomeSeq/Baylor-exon-Sept09|Baylor-exon-Sept09]], Nicking adaptors, 12,370 ##[[Kun:LabNotes/ExonomeSeq/Baylor-HybridCapture-FlyDup901|Baylor-HybridCapture-FlyDup901]], Gnirke 15bp adaptors, 2105 ##[[Kun:LabNotes/ASE/CES36k18bp|CES36k18bp]], AP1V6s, 36,456 ##[[Kun:LabNotes/ExonomeSeq/bisFirstE8k|bisFirstExon]], AP1V4, 4069, [[Media:CircPlex_design_VDec08.doc|Primer Info]]
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