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*2009 | *2009: Jul-Dec | ||
{| {{table}} | |||
| align="center" style="background:#f0f0f0;"|'''Month''' | |||
| align="center" style="background:#f0f0f0;"|'''Date''' | |||
| align="center" style="background:#f0f0f0;"|'''Probe Set''' | |||
| align="center" style="background:#f0f0f0;"|'''Tube label''' | |||
| align="center" style="background:#f0f0f0;"|'''Conc. x vol.''' | |||
| align="center" style="background:#f0f0f0;"|'''Seq facility''' | |||
| align="center" style="background:#f0f0f0;"|'''Lib. Const.''' | |||
| align="center" style="background:#f0f0f0;"|'''Read length''' | |||
| align="center" style="background:#f0f0f0;"|'''# filtered reads''' | |||
| align="center" style="background:#f0f0f0;"|'''# mappable reads''' | |||
|- | |||
| July 28||HL002||Exome||s1,PhiX|| -||Zhang Lab||Illumina||40bp||19474917||- | |||
|- | |||
| July 28||HL002||Exome||s2,Hues 6 ES-Dscp|| -||Zhang Lab||Kun||40bp||9991852||- | |||
|- | |||
| July 28||HL002||Exome||s3,Hues 6 ES-trp|| -||Zhang Lab||Kun||40bp||8386791||- | |||
|- | |||
| July 28||HL002||Exome||s4,NA12878|| -||Zhang Lab||[[Alice:LabNotes/2009-7-21|Alice]]||40bp||15015962||- | |||
|- | |||
| July 28||HL002||Exome||s5,NA12878|| -||Zhang Lab||[[Alice:LabNotes/2009-7-21|Alice]]||40bp||15092576||- | |||
|- | |||
| July 28||HL002||Exome||s6,NA12878|| -||Zhang Lab||[[Alice:LabNotes/2009-7-21|Alice]]||40bp||15223607||- | |||
|- | |||
| July 28||HL002||Exome||s7,PGP10|| -||Zhang Lab||[[Alice:LabNotes/2009-7-21|Alice]]||40bp||15059266||- | |||
|- | |||
| July 28||HL002||RNA||s8,CES8k-Hybrid1-ES|| -||Zhang Lab||Kun||40bp||8178891||- | |||
|- | |||
| August 05||HL003||Exome||s1,DF6-9-9|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||4,417,586||2,288,789 | |||
|- | |||
| August 05||HL003||Exome||s2,Foreskin|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||5,020,353||3,214,546 | |||
|- | |||
| August 05||HL003||Exome||s3,Foreskin-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||6,660,328||3,119,331 | |||
|- | |||
| August 05||HL003||Exome||s4,NA12878|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||3,727,520||1,981,326 | |||
|- | |||
| August 05||HL003||Exome||s5,NA12878-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||6,455,281||3,253,093 | |||
|- | |||
| August 05||HL003||Exome||s6,NA12878|| -||Zhang Lab||Billy||40bp||14,992,076||8,643,897 | |||
|- | |||
| August 05||HL003||Exome||s7,PGP10|| -||Zhang Lab||Billy||40bp||19,423,381||11,040,240 | |||
|- | |||
| August 05||HL003||Control||s8,PhiX|| -||Zhang Lab||Illumina||40bp||20,078,536||19,817,515 | |||
|- | |||
| August 09||HL004||Exome||s1,DF6-9-9-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||17,147,112||- | |||
|- | |||
| August 09||HL004||Exome||s2,DF6-9-9-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||16,956,048||- | |||
|- | |||
| August 09||HL004||Exome||s3,Foreskin-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||16,802,403||- | |||
|- | |||
| August 09||HL004||Exome||s4,PGP10|| -||Zhang Lab||Billy||40bp||18,644,730||- | |||
|- | |||
| August 09||HL004||Exome||s5,PGP4|| -||Zhang Lab||Billy||40bp||18,809,762||- | |||
|- | |||
| August 09||HL004||Exome||s6,PGP4|| -||Zhang Lab||Billy||40bp||18,970,955||- | |||
|- | |||
| August 09||HL004||Exome||s7,PGP6|| -||Zhang Lab||Billy||40bp||18,723,412||- | |||
|- | |||
| August 09||HL004||Exome||s8,PGP6|| -||Zhang Lab||Billy||40bp||19,233,480||- | |||
|- | |||
| August 13||HL005||Exome||NA12878||-||Zhang lab||Billy||40bp||15,666,228|| | |||
|- | |||
| August 13||HL005||Exome||NA12878||-||Zhang lab||Billy||40bp||14,091,504|| | |||
|- | |||
| August 13||HL005||Cpg97k||Par1||-||Zhang lab||[[Jie:LabNotes/CpgSeq/2009-8-5|Jie Deng]]||40bp||10,385,536||3,005,889 | |||
|- | |||
| August 13||HL005||Cpg97k||Par9||-||Zhang lab||[[Jie:LabNotes/CpgSeq/2009-8-5|Jie Deng]]||40bp||7,537,771||3,430,524 | |||
|- | |||
| August 13||HL005||USC-Hsieh||MH010B xMboI||-||Zhang lab||Kyle||40bp||6,699,431||6,125,263 | |||
|- | |||
| August 13||HL005||USC-Hsieh||MH010B xDpnI||-||Zhang lab||Kyle||40bp||2,204,512||2,094,844 | |||
|- | |||
| August 13||HL005||Exome(end-sequencing)||PGP2S-Phu||54.5nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||40bp||7,022,465||5,950,793 | |||
|- | |||
| August 13||HL005||Exome(end-sequencing)||PGP2S-iProof||60.6nM||Zhang lab||[[Alice:LabNotes/2009-8-6|Alice Li]]||40bp||5,798,969||4,756,952 | |||
|- | |||
| August 16||HL006||Exome||s1,DF6-9-9|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||5,684,406||- | |||
|- | |||
| August 16||HL006||Exome||s2,Foreskin|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||8,009,671||- | |||
|- | |||
| August 16||HL006||Exome||s3,Foreskin-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||8,369,819||- | |||
|- | |||
| August 16||HL006||Exome||s4,NA12878|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||7,487,512||- | |||
|- | |||
| August 16||HL006||Exome||s5,NA12878-lig|| -||Zhang Lab||[[Alice:LabNotes/2009-7-28|Alice]]||40bp||8,411,077||- | |||
|- | |||
| August 16||HL006||Exome||s6,NA12878|| -||Zhang Lab||Billy||40bp||8,556,271||- | |||
|- | |||
| August 16||HL006||Exome||s7,PGP10|| -||Zhang Lab||Billy||40bp||9,736,297||- | |||
|- | |||
| August 16||HL006||Control||s8,PhiX|| -||Zhang Lab||Illumina||40bp||6,985,337||- | |||
|} | |||
*2009: Jan-Jun | |||
{| {{table}} | {| {{table}} | ||
| align="center" style="background:#f0f0f0;"|'''Month''' | | align="center" style="background:#f0f0f0;"|'''Month''' | ||
Line 122: | Line 217: | ||
|- | |- | ||
| June||18||cpg97k||foreskin_97k_repeat ||7.5nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||6,683,303 | | June||18||cpg97k||foreskin_97k_repeat ||7.5nM x 5ul||Bing Ren||[[Jie:LabNotes/CpgSeq/2009-5-29|Jie]]||41bp||6,683,303 | ||
} | |||
Revision as of 15:55, 29 August 2009
- 2009: Jul-Dec
Month | Date | Probe Set | Tube label | Conc. x vol. | Seq facility | Lib. Const. | Read length | # filtered reads | # mappable reads |
July 28 | HL002 | Exome | s1,PhiX | - | Zhang Lab | Illumina | 40bp | 19474917 | - |
July 28 | HL002 | Exome | s2,Hues 6 ES-Dscp | - | Zhang Lab | Kun | 40bp | 9991852 | - |
July 28 | HL002 | Exome | s3,Hues 6 ES-trp | - | Zhang Lab | Kun | 40bp | 8386791 | - |
July 28 | HL002 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 15015962 | - |
July 28 | HL002 | Exome | s5,NA12878 | - | Zhang Lab | Alice | 40bp | 15092576 | - |
July 28 | HL002 | Exome | s6,NA12878 | - | Zhang Lab | Alice | 40bp | 15223607 | - |
July 28 | HL002 | Exome | s7,PGP10 | - | Zhang Lab | Alice | 40bp | 15059266 | - |
July 28 | HL002 | RNA | s8,CES8k-Hybrid1-ES | - | Zhang Lab | Kun | 40bp | 8178891 | - |
August 05 | HL003 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice | 40bp | 4,417,586 | 2,288,789 |
August 05 | HL003 | Exome | s2,Foreskin | - | Zhang Lab | Alice | 40bp | 5,020,353 | 3,214,546 |
August 05 | HL003 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 6,660,328 | 3,119,331 |
August 05 | HL003 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 3,727,520 | 1,981,326 |
August 05 | HL003 | Exome | s5,NA12878-lig | - | Zhang Lab | Alice | 40bp | 6,455,281 | 3,253,093 |
August 05 | HL003 | Exome | s6,NA12878 | - | Zhang Lab | Billy | 40bp | 14,992,076 | 8,643,897 |
August 05 | HL003 | Exome | s7,PGP10 | - | Zhang Lab | Billy | 40bp | 19,423,381 | 11,040,240 |
August 05 | HL003 | Control | s8,PhiX | - | Zhang Lab | Illumina | 40bp | 20,078,536 | 19,817,515 |
August 09 | HL004 | Exome | s1,DF6-9-9-lig | - | Zhang Lab | Alice | 40bp | 17,147,112 | - |
August 09 | HL004 | Exome | s2,DF6-9-9-lig | - | Zhang Lab | Alice | 40bp | 16,956,048 | - |
August 09 | HL004 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 16,802,403 | - |
August 09 | HL004 | Exome | s4,PGP10 | - | Zhang Lab | Billy | 40bp | 18,644,730 | - |
August 09 | HL004 | Exome | s5,PGP4 | - | Zhang Lab | Billy | 40bp | 18,809,762 | - |
August 09 | HL004 | Exome | s6,PGP4 | - | Zhang Lab | Billy | 40bp | 18,970,955 | - |
August 09 | HL004 | Exome | s7,PGP6 | - | Zhang Lab | Billy | 40bp | 18,723,412 | - |
August 09 | HL004 | Exome | s8,PGP6 | - | Zhang Lab | Billy | 40bp | 19,233,480 | - |
August 13 | HL005 | Exome | NA12878 | - | Zhang lab | Billy | 40bp | 15,666,228 | |
August 13 | HL005 | Exome | NA12878 | - | Zhang lab | Billy | 40bp | 14,091,504 | |
August 13 | HL005 | Cpg97k | Par1 | - | Zhang lab | Jie Deng | 40bp | 10,385,536 | 3,005,889 |
August 13 | HL005 | Cpg97k | Par9 | - | Zhang lab | Jie Deng | 40bp | 7,537,771 | 3,430,524 |
August 13 | HL005 | USC-Hsieh | MH010B xMboI | - | Zhang lab | Kyle | 40bp | 6,699,431 | 6,125,263 |
August 13 | HL005 | USC-Hsieh | MH010B xDpnI | - | Zhang lab | Kyle | 40bp | 2,204,512 | 2,094,844 |
August 13 | HL005 | Exome(end-sequencing) | PGP2S-Phu | 54.5nM | Zhang lab | Alice Li | 40bp | 7,022,465 | 5,950,793 |
August 13 | HL005 | Exome(end-sequencing) | PGP2S-iProof | 60.6nM | Zhang lab | Alice Li | 40bp | 5,798,969 | 4,756,952 |
August 16 | HL006 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice | 40bp | 5,684,406 | - |
August 16 | HL006 | Exome | s2,Foreskin | - | Zhang Lab | Alice | 40bp | 8,009,671 | - |
August 16 | HL006 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 8,369,819 | - |
August 16 | HL006 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 7,487,512 | - |
August 16 | HL006 | Exome | s5,NA12878-lig | - | Zhang Lab | Alice | 40bp | 8,411,077 | - |
August 16 | HL006 | Exome | s6,NA12878 | - | Zhang Lab | Billy | 40bp | 8,556,271 | - |
August 16 | HL006 | Exome | s7,PGP10 | - | Zhang Lab | Billy | 40bp | 9,736,297 | - |
August 16 | HL006 | Control | s8,PhiX | - | Zhang Lab | Illumina | 40bp | 6,985,337 | - |
- 2009: Jan-Jun
Month | Date | Probe Set | Tube label | Conc. x vol. | Seq facility | Lib. Const. | Read length | # filtered reads | # mappable reads |
Feb | 6 | CpG30k_paired end | BJ | 75.4nM x 15ul; | BioGem | Jie | 36bp x 2 | 7,662,828 | 2,535,784 |
Feb | 6 | CpG30k_paired end | Hybrid_1 | 87.6nM x 15ul; | BioGem | Jie | 36bp x 2 | 6,829,142 | 1,946,531 |
Feb | 6 | CpG30k_paired end | PGP1_F | 106nM x 15ul; | BioGem | Jie | 36bp x 2 | 8,441,376 | 2,854,604 |
Feb | 6 | CpG30k_paired end | HUES12 | 74.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 7,404,514 | 1,424,697 |
Feb | 6 | CpG30k_paired end | PGP1_iPS1 | 90.3nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,617,832 | 1,899,427 |
Feb | 6 | CpG30k_paired end | PGP1_L | 77.6nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,258,188 | 2,220,886 |
Feb | 6 | CpG30k_paired end | PGP3_L | 80.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,286,442 | 1,838,971 |
Feb | 6 | CpG30k_paired end | PGP9_L | 96.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,689,552 | 2,292,028 |
March | 13 | Exome | PGP1-CTRL | 48.5ng/ul; 30ul | Billy Li (Harvard) | Alice Li | 40bp | 9,707,995 | 7,655,774 |
March | 13 | Exome | PGP1-shaked | 46ng/ul; 30ul | Billy Li (Harvard) | Alice Li | 40bp | 9,424,752 | 7,561,445 |
May | 25 | Exome | PGP1E0509A | 77nM; 40ul | BioGem | Alice Li | 76bp | 7,471,741 | 1,086,264 |
May | 25 | Exome | PGP2E0509A | 64nM; 40ul | BioGem | Alice Li | 76bp | 5,014,823 | 2,595,521 |
May | 25 | Exome | PGP3E0509A | 49.5nM; 40ul | BioGem | Alice Li | 76bp | 5,358,442 | 3,213,790 |
May | 25 | Exome | NA12878E0509A | 60nM; 40ul | BioGem | Alice Li | 76bp | 7,360,495 | 2,673,495 |
May | 25 | Exome | PGP1E0509k | 19nM; 40ul | BioGem | Kun Zhang | 76bp | 3,520,981 | 2,350,708 |
May | 25 | Exome | PGP2E0509k | 20nM; 40ul | BioGem | Kun Zhang | 76bp | 5,095,881 | 2,568,349 |
May | 25 | Exome | PGP3E0509k | 19nM; 40ul | BioGem | Kun Zhang | 76bp | 3,734,068 | 1,989,542 |
May | 25 | Exome | NA12878E0509k | 33nM; 40ul | BioGem | Kun Zhang | 76bp | 3,900,764 | 778,134 |
May | 26 | cpg97K_end sequencing | NA21070*1 100406 captured targets | 25.3ng/ul (96nM) x 15ul; | Yuan Gao | Jie/Kun | 40bp | 2,535,463 | |
May | 26 | cpg97K_end sequencing | NA21070*1 100406 normalized captured targets | 23.1ng/ul (87nM) x 15ul; | Yuan Gao | Jie/Kun | 40bp | 2,377,687 | |
May | 29 | Exome(end sequencing) | PGP2_052909A | 111nM; 15ul | Yuan Gao | Alice Li | 40bp | 6,390,979 | |
May | 29 | Exome(end sequencing) | PGP3_052909A | 126nM; 15ul | Yuan Gao | Alice Li | 40bp | 6,110,991 | |
June | 4 | Exome | PGP5-1-060809 | 62.5nM; 10ul | BioGem | Alice Li | 36bp | 14,404,283 | 10,812,047 |
June | 4 | Exome | PGP5-2-060809 | 65.7nM; 10ul | BioGem | Alice Li | 36bp | 14,994,770 | 11,253,456 |
June | 4 | Exome | PGP7-1-060809 | 75.5nM; 10ul | BioGem | Alice Li | 36bp | 13,384,832 | 9,712,648 |
June | 4 | Exome | PGP7-2-060809 | 79.7nM; 20ul | BioGem | Alice Li | 36bp | 14,204,382/13,509,137 | 10,519,374/9,961,481 |
June | 8 | cpg97k | DF6-9-9_P16(4) | 11nM x 10ul x 2 lanes; | BioGem | Jie | 36bp | 4,688,926 | |
June | 8 | cpg97k | foreskin | 15nM x 10ul x 1 lane. | BioGem | Jie | 36bp | 3,320,865 | 1,825,557 |
June | 10 | Exome | PGP1-3-061009 | 34nM; 15ul | Bing Ren | Alice Li | 76bp | 5,802,565 | |
June | 10 | Exome | PGP2-3-061009 | 25nM; 15ul | Bing Ren | Alice Li | 76bp | 3,193,644 | |
June | 10 | Exome | PGP3-3-061009 | 22nM; 15ul | Bing Ren | Alice Li | 76bp | 2,465,788 | |
June | 10 | Exome | NA12878-3-061009 | 22nM; 15ul | Bing Ren | Alice Li | 76bp | 1,285,265 | |
June | 10 | cpg97k | NA21070*1_100406_97k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 2,682,703 | 424,191 |
June | 10 | cpg30k | DF6-9-9_P16(4)_30k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 918,811 | 151,519 |
June | 10 | cpg30k | foreskin_30k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 424,770 | 65,177 |
June | 18 | Exome | PGP5-1-060809 | 62.5nM; 5ul | Bing Ren | Alice Li | 41bp | 4,122,460 | |
June | 18 | Exome | PGP5-2-060809 | 65.7nM; 5ul | Bing Ren | Alice Li | 41bp | 3,907,906 | |
June | 18 | Exome | PGP7-1-060809 | 75.5nM; 5ul | Bing Ren | Alice Li | 41bp | 1,419,496 | |
June | 18 | CES27k9bp_end sequening | Hybrid_1_CES27k9bp | 4.3ng/ul (37nM) x 5ul | Bing Ren | Jie | 41bp | 7,484,832 | |
June | 18 | CES27k9bp_end sequening | BJ_CES27k9bp | 7.2ng/ul (62nM) x 5ul | Bing Ren | Jie | 41bp | 5,643,984 | |
June | 18 | cpg97k | DF6-9-9_P16(4)_97k_repeat | 11nM x 5ul | Bing Ren | Jie | 41bp | 4,761,133 | |
June | 18 | cpg97k | foreskin_97k_repeat | 7.5nM x 5ul | Bing Ren | Jie | 41bp | 6,683,303
} |