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>Alan6017518
>Alan6017518
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| align="center" style="background:#f0f0f0;"|'''# filtered reads'''
| align="center" style="background:#f0f0f0;"|'''# filtered reads'''
| align="center" style="background:#f0f0f0;"|'''# mappable reads'''
| align="center" style="background:#f0f0f0;"|'''# mappable reads'''
|-
| Feb 12||HL039||CPGmm9A||JD-CPGmm9A-CtmESC-Feb10||||Zhang Lab||Jie||60bp
|-
| Feb 12||||||AL-DigiQ-CViB/iF-Jan29||||||||60bp
|-
| Feb 12||HL039||DigiQ||KZ-DigiQ-FS_300BP-Jan27||||Zhang Lab||Kun||60bp
|-
| Feb 12||||||PhiX||||||Alice||60bp
|-
| Feb 12||HL039||Exome||HMS-GC-exome-Nim-GT||||||Billy/Luhan ||60bp
|-
| Feb 12||HL039||Exome||HMS-GC-Exome-PGP4||||||Billy/Luhan ||60bp
|-
| Feb 12||HL039||CPG97K||JD-CPG97K-Breastcancer_03170B09-Jan28-B7||||Zhang Lab||Jie||60bp
|-
| Feb 12||HL039||CPG97K|| JD-CPG97K-Breast_Cancer_03259B09-Jan28-B8||||Zhang Lab||Jie||60bp
|-
| Feb 12||HL039||Exome||AL-Exome-CViB-AB_Jan28||||Zhang Lab||Alice||60bp
|-
| Feb 12||HL039||CPGmm9A||JD-CPGmm9A-TETmESC-Feb10||||Zhang Lab||Jie||60bp
|-
| Feb19||HL040||||UCSD-BO-YC_RNA-Feb17||||||||60bp
|-
| ||||||AL-DigiQ-CViB/iF-Jan29||||||Alice||60bp
|-
| Feb19||HL040||DigiQ||KZ-DigiQ-FS_300BP-Jan27||||Zhang Lab||Kun||60bp
|-
| ||||||PhiX||||||||60bp
|-
| Feb19||HL040||CPG 30 97K||JD-CPG97k+30k-Breast_cancer_01373A17-Jan15-B3||||Zhang Lab||Jie||60bp
|-
| Feb19||HL040||CPG 30 97K||JD-CPG97k+30k-Breast_cancer_01373B09-Jan15-B4||||Zhang Lab||Jie||60bp
|-
| Feb19||HL040||CPG 97K||JD-CPG97K-BreastCancer-09075B09-Feb17-15E||||Zhang Lab||Jie||60bp
|-
| Feb19||HL040||CPG 97K||JD-CPG97K-BreastCancer-09075B09-Feb17-15R||||Zhang Lab||Jie||60bp
|-
| Feb19||HL040||DigiQ||AL-DigiQ-CVF-Feb17 w/ PhiX||||Zhang Lab||Alice||60bp
|-
| ||||||AL-DigiQ-CVF-Jan29||||||Alice||60bp
|-
| Feb19||HL040||DigiQ||KZ-DigiQ-FS_6N-Jan27||||Zhang Lab||Kun||60bp
|-
| ||||||PhiX||||||||60bp
|-
| Feb26||HL041||CPG 97K||JD-CPG97K-BreastCancer-05359A17_R-Feb17-B11R||||Zhang Lab||Jie||60bp
|-
| ||||||AL-DigiQ-CViB/iF-Jan29||||||Alice||60bp
|-
| Feb26||HL041||DigiQ||KZ-DigiQ-FS_300BP-Jan27||||Zhang Lab||Kun||60bp
|-
| ||||||PhiX||||||||60bp
|-
| Feb26||HL041||Exome||HMS-GC-Exome-PGP7-Feb24||||||Billy/Luhan ||60bp
|-
| Feb26||HL041||||HMS-GC-Exome-PGP9-Feb24||||||Billy/Luhan ||60bp
|-
| Feb26||HL041||CPG 97K||JD-CPG97K-BreastCancer-05359B09_R-Feb17-B12R||||Zhang Lab||Jie||60bp
|-
| Feb26||HL041||CPG 97K||JD-CPG97K-BreastCancer_07292A17_R-Feb17-B13R||||Zhang Lab||Jie||60bp
|-
| Feb26||HL041||CPG 97K||JD-CPG97K-BreastCancer_07292B09_R-Feb17-B14R||||Zhang Lab||Jie||60bp
|-
| ||||||AL-DigiQ-CVF-Jan29||||||Alice||60bp
|-
| Feb26||HL041||DigiQ||KZ-DigiQ-FS_6N-Jan27||||Zhang Lab||Kun||60bp
|-
| ||||||PhiX||||||||60bp
|-
| ||||||AL-DigiQ-CViB/iF-Jan29||||||Alice||60bp
|-
| Mar2||HL042||DigiQ||KZ-DigiQ-FS_300BP-Jan27||||Zhang Lab||Kun||60bp
|-
| ||||||PhiX||||||||60bp
|-
| Mar2||HL042||?||MCG-HS-EJ644-Feb26||||?||?||60bp
|-
| Mar2||HL042||Exome||AL-Exome-CViB-Feb21-Agilent||||Zhang Lab||Alice||60bp
|-
| Mar2||HL042||CPG97K||JD-cpg97k-Breastcancer_09092B09-Feb25-B16||||Zhang Lab||Jie||60bp
|-
| Mar2||HL042||CPG97K||JD-cpg97k-Breastcancer_09123A17-Feb25-B17||||Zhang Lab||Jie||60bp
|-
| Mar2||HL042||CPG97K||JD-cpg97k-Breastcancer_09123B09-Feb25-B18||||Zhang Lab||Jie||60bp
|-
| Mar2||HL042||CPG97K||JD-cpg97k-Breastcancer_09206B09-Feb25-B19||||Zhang Lab||Jie||60bp
|-
| Mar2||HL042||CPG97K||JD-cpg97k-Breastcancer_09265B09-Feb25-B20||||Zhang Lab||Jie||60bp
|-
| Mar5||HL043||Genome||AL-Genome-FS_gDNA-Feb8||||Zhang Lab||Alice||60bp
|-
| Mar5||HL043||Genome||AL-Genome-FS_gDNA-Feb8||||Zhang Lab||Alice||60bp
|-
| Mar5||HL043||DigiQ||AL-DigiQ-CVF_Feb-Mar3 w/ PhiX||||Zhang Lab||Alice||60bp
|-
| Mar5||HL043||CPG97K||JD-CPG97K-BC_09351A17-Feb25 -B21||||Zhang Lab||Jie||60bp
|-
| Mar5||HL043||CPG97K||JD-CPG97K-BC_09491A17-Feb25-B23||||Zhang Lab||Jie||60bp
|-
| Mar5||HL043||CPG97K||JD-CPG97K-BC_09491B09-Feb25-B24||||Zhang Lab||Jie||60bp
|-
| Mar5||HL043||Genome||AL-Genome-DF_gDNA-Feb8||||Zhang Lab||Alice||60bp
|-
| Mar5||HL043||Genome||AL-Genome-DF_gDNA-Feb8||||Zhang Lab||Alice||60bp
|-
| Mar9||HL044||CPG97K||JD-CPG97K-BC_11306A18-Feb25-B25||||Zhang Lab||Jie||60bp
|-
| Mar9||HL044||CPG97K||JD-CPG97K-BC_11306B09-Feb25-B26||||Zhang Lab||Jie||60bp
|-
| Mar9||HL044||CPG97K||JD-CPG97K-BC_13066A17-Feb25-B27||||Zhang Lab||Jie||60bp
|-
| Mar9||HL044||Genome||AL-Genome-FS_gDNA-Feb8||||Zhang Lab||Alice||60bp
|-
| Mar9||HL044||CPG 30 97K||JD-CPG97K+30K-BC_01373A17-Jan15-B3||||Zhang Lab||Jie||60bp
|-
| Mar9||HL044||Exome||AL-Exome-CViB-Feb21-Agilent||||Zhang Lab||Alice||60bp
|-
| Mar9||HL044||DigiQ||AL-DigiQ-CVF_PhiX-Mar3-(Jan29)||||Zhang Lab||Alice||60bp
|-
| Mar9||HL044||DigiQ||KZ-DigiQ-FS_6N_PhiX-Mar3-(Jan27)||||Zhang Lab||Kun||60bp
|-
| Mar12||HL045||Exome||AL-exome-hFib 17-Eggan-Mar9||||Zhang Lab||Alice||80bp
|-
| Mar12||HL045||Exome||HMS-GC-Exome-PGP2||||?||?||80bp
|-
| Mar12||HL045||Exome||HMS-GC-Exome-PGP7-Feb24||||||Billy/Luhan ||80bp
|-
| Mar12||HL045||Exome||HMS-GC-Exome-PGP9-Feb24||||||Billy/Luhan ||80bp
|-
| Mar12||HL045||Exome||AL-exome-hFib 11-Eggan-Mar9||||Zhang Lab||Alice||80bp
|-
| Mar12||HL045||Exome||AL-exome-ips 11b-Eggan-Mar9 ||||Zhang Lab||Alice||80bp
|-
| Mar12||HL045||Exome||AL-exome-ips 17a-Eggan-Mar9||||Zhang Lab||Alice||80bp
|-
| Mar12||HL045||Exome||AL-exome-ips 17b-Eggan-Mar9||||Zhang Lab||Alice||80bp
|-
|-
| Feb 12||HL039||CPGmm9A||JD-CPGmm9A-CtmESC-Feb10||||Zhang Lab||Jie
| Feb 12||HL039||CPGmm9A||JD-CPGmm9A-CtmESC-Feb10||||Zhang Lab||Jie

Revision as of 16:38, 21 March 2010

2010

Jan-Jun

Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 12 HL039 CPGmm9A JD-CPGmm9A-CtmESC-Feb10 Zhang Lab Jie 60bp
Feb 12 AL-DigiQ-CViB/iF-Jan29 60bp
Feb 12 HL039 DigiQ KZ-DigiQ-FS_300BP-Jan27 Zhang Lab Kun 60bp
Feb 12 PhiX Alice 60bp
Feb 12 HL039 Exome HMS-GC-exome-Nim-GT Billy/Luhan 60bp
Feb 12 HL039 Exome HMS-GC-Exome-PGP4 Billy/Luhan 60bp
Feb 12 HL039 CPG97K JD-CPG97K-Breastcancer_03170B09-Jan28-B7 Zhang Lab Jie 60bp
Feb 12 HL039 CPG97K JD-CPG97K-Breast_Cancer_03259B09-Jan28-B8 Zhang Lab Jie 60bp
Feb 12 HL039 Exome AL-Exome-CViB-AB_Jan28 Zhang Lab Alice 60bp
Feb 12 HL039 CPGmm9A JD-CPGmm9A-TETmESC-Feb10 Zhang Lab Jie 60bp
Feb19 HL040 UCSD-BO-YC_RNA-Feb17 60bp
AL-DigiQ-CViB/iF-Jan29 Alice 60bp
Feb19 HL040 DigiQ KZ-DigiQ-FS_300BP-Jan27 Zhang Lab Kun 60bp
PhiX 60bp
Feb19 HL040 CPG 30 97K JD-CPG97k+30k-Breast_cancer_01373A17-Jan15-B3 Zhang Lab Jie 60bp
Feb19 HL040 CPG 30 97K JD-CPG97k+30k-Breast_cancer_01373B09-Jan15-B4 Zhang Lab Jie 60bp
Feb19 HL040 CPG 97K JD-CPG97K-BreastCancer-09075B09-Feb17-15E Zhang Lab Jie 60bp
Feb19 HL040 CPG 97K JD-CPG97K-BreastCancer-09075B09-Feb17-15R Zhang Lab Jie 60bp
Feb19 HL040 DigiQ AL-DigiQ-CVF-Feb17 w/ PhiX Zhang Lab Alice 60bp
AL-DigiQ-CVF-Jan29 Alice 60bp
Feb19 HL040 DigiQ KZ-DigiQ-FS_6N-Jan27 Zhang Lab Kun 60bp
PhiX 60bp
Feb26 HL041 CPG 97K JD-CPG97K-BreastCancer-05359A17_R-Feb17-B11R Zhang Lab Jie 60bp
AL-DigiQ-CViB/iF-Jan29 Alice 60bp
Feb26 HL041 DigiQ KZ-DigiQ-FS_300BP-Jan27 Zhang Lab Kun 60bp
PhiX 60bp
Feb26 HL041 Exome HMS-GC-Exome-PGP7-Feb24 Billy/Luhan 60bp
Feb26 HL041 HMS-GC-Exome-PGP9-Feb24 Billy/Luhan 60bp
Feb26 HL041 CPG 97K JD-CPG97K-BreastCancer-05359B09_R-Feb17-B12R Zhang Lab Jie 60bp
Feb26 HL041 CPG 97K JD-CPG97K-BreastCancer_07292A17_R-Feb17-B13R Zhang Lab Jie 60bp
Feb26 HL041 CPG 97K JD-CPG97K-BreastCancer_07292B09_R-Feb17-B14R Zhang Lab Jie 60bp
AL-DigiQ-CVF-Jan29 Alice 60bp
Feb26 HL041 DigiQ KZ-DigiQ-FS_6N-Jan27 Zhang Lab Kun 60bp
PhiX 60bp
AL-DigiQ-CViB/iF-Jan29 Alice 60bp
Mar2 HL042 DigiQ KZ-DigiQ-FS_300BP-Jan27 Zhang Lab Kun 60bp
PhiX 60bp
Mar2 HL042 ? MCG-HS-EJ644-Feb26 ? ? 60bp
Mar2 HL042 Exome AL-Exome-CViB-Feb21-Agilent Zhang Lab Alice 60bp
Mar2 HL042 CPG97K JD-cpg97k-Breastcancer_09092B09-Feb25-B16 Zhang Lab Jie 60bp
Mar2 HL042 CPG97K JD-cpg97k-Breastcancer_09123A17-Feb25-B17 Zhang Lab Jie 60bp
Mar2 HL042 CPG97K JD-cpg97k-Breastcancer_09123B09-Feb25-B18 Zhang Lab Jie 60bp
Mar2 HL042 CPG97K JD-cpg97k-Breastcancer_09206B09-Feb25-B19 Zhang Lab Jie 60bp
Mar2 HL042 CPG97K JD-cpg97k-Breastcancer_09265B09-Feb25-B20 Zhang Lab Jie 60bp
Mar5 HL043 Genome AL-Genome-FS_gDNA-Feb8 Zhang Lab Alice 60bp
Mar5 HL043 Genome AL-Genome-FS_gDNA-Feb8 Zhang Lab Alice 60bp
Mar5 HL043 DigiQ AL-DigiQ-CVF_Feb-Mar3 w/ PhiX Zhang Lab Alice 60bp
Mar5 HL043 CPG97K JD-CPG97K-BC_09351A17-Feb25 -B21 Zhang Lab Jie 60bp
Mar5 HL043 CPG97K JD-CPG97K-BC_09491A17-Feb25-B23 Zhang Lab Jie 60bp
Mar5 HL043 CPG97K JD-CPG97K-BC_09491B09-Feb25-B24 Zhang Lab Jie 60bp
Mar5 HL043 Genome AL-Genome-DF_gDNA-Feb8 Zhang Lab Alice 60bp
Mar5 HL043 Genome AL-Genome-DF_gDNA-Feb8 Zhang Lab Alice 60bp
Mar9 HL044 CPG97K JD-CPG97K-BC_11306A18-Feb25-B25 Zhang Lab Jie 60bp
Mar9 HL044 CPG97K JD-CPG97K-BC_11306B09-Feb25-B26 Zhang Lab Jie 60bp
Mar9 HL044 CPG97K JD-CPG97K-BC_13066A17-Feb25-B27 Zhang Lab Jie 60bp
Mar9 HL044 Genome AL-Genome-FS_gDNA-Feb8 Zhang Lab Alice 60bp
Mar9 HL044 CPG 30 97K JD-CPG97K+30K-BC_01373A17-Jan15-B3 Zhang Lab Jie 60bp
Mar9 HL044 Exome AL-Exome-CViB-Feb21-Agilent Zhang Lab Alice 60bp
Mar9 HL044 DigiQ AL-DigiQ-CVF_PhiX-Mar3-(Jan29) Zhang Lab Alice 60bp
Mar9 HL044 DigiQ KZ-DigiQ-FS_6N_PhiX-Mar3-(Jan27) Zhang Lab Kun 60bp
Mar12 HL045 Exome AL-exome-hFib 17-Eggan-Mar9 Zhang Lab Alice 80bp
Mar12 HL045 Exome HMS-GC-Exome-PGP2 ? ? 80bp
Mar12 HL045 Exome HMS-GC-Exome-PGP7-Feb24 Billy/Luhan 80bp
Mar12 HL045 Exome HMS-GC-Exome-PGP9-Feb24 Billy/Luhan 80bp
Mar12 HL045 Exome AL-exome-hFib 11-Eggan-Mar9 Zhang Lab Alice 80bp
Mar12 HL045 Exome AL-exome-ips 11b-Eggan-Mar9 Zhang Lab Alice 80bp
Mar12 HL045 Exome AL-exome-ips 17a-Eggan-Mar9 Zhang Lab Alice 80bp
Mar12 HL045 Exome AL-exome-ips 17b-Eggan-Mar9 Zhang Lab Alice 80bp
Feb 12 HL039 CPGmm9A JD-CPGmm9A-CtmESC-Feb10 Zhang Lab Jie
Feb 12 HL039 AL-DigiQ-CViB/iF-Jan29 Zhang Lab
Feb 12 HL039 DigiQ KZ-DigiQ-FS_300BP-Jan27 Zhang Lab Kun
Feb 12 HL039 PhiX Zhang Lab Alice
Feb 12 HL039 Exome HMS-GC-exome-Nim-GT Zhang Lab Billy/Luhan
Feb 12 HL039 Exome HMS-GC-Exome-PGP4 Zhang Lab Billy/Luhan
Feb 12 HL039 CPG97K JD-CPG97K-Breastcancer_03170B09-Jan28-B7 Zhang Lab Jie
Feb 12 HL039 CPG97K JD-CPG97K-Breast_Cancer_03259B09-Jan28-B8 Zhang Lab Jie
Feb 12 HL039 Exome AL-Exome-CViB-AB_Jan28 Zhang Lab Alice
Feb 12 HL039 CPGmm9A JD-CPGmm9A-TETmESC-Feb10 Zhang Lab Jie
Feb 7 HL038 Exome s1,AL-Exome-CViB-AB-Jan28 - Zhang Lab Alice 60bp 2,631,195
Feb 7 HL038 BSPP s2,JD-cpg97k-Breastcancer_sample_01373B09-Jan28 - Zhang Lab Jie 60bp 28,592,257 73%
Feb 7 HL038 BSPP s3,JD-cpg97k-Breastcancer_sample_01436B09_Jan28 - Zhang Lab Jie 60bp 28,611,301 72%
Feb 7 HL038 Exome s4,KZ-Exome-CViB-N2-Jan28 - Zhang Lab Kun 60bp 22,996,517
Feb 7 HL038 BSPP s5,JD-cpg97k-Harvard_sample_M0013.1-Jan28 - Zhang Lab Jie 60bp 27,703,912
Feb 7 HL038 BSPP s6,JD-cpg97k-Harvard_sample_M0077.3-Jan28 - Zhang Lab Jie 60bp 28,515,530
Feb 7 HL038 BSPP s7,JD-cpg97k-Harvard_sample_M0124.3-Jan28 - Zhang Lab Jie 60bp 27,796,744
Feb 7 HL038 BSPP s8,JD-cpg97k-Harvard_sample_M0188.3-Jan28 - Zhang Lab Jie 60bp 26,285,658
Feb 2 HL037 BSPP s1,JD-B3 - Zhang Lab Alice 60bp 329192
Feb 2 HL037 DigiQ s2,AL-DigiQ-CVF-Jan29/KZ-DigiQ-FS_6N-Jan27 - Zhang Lab Jie 60bp 396995
Feb 2 HL037 Exome s3,AL-Exome-DF-Jan26-Nimblegen - Zhang Lab Alice 60bp 24111229 86%
Feb 2 HL037 BSPP s4,KZ-BSPP-B2-N2-Jan28 - Zhang Lab Kun 60bp 24816617 22%/60%(hg18)
Feb 2 HL037 Exome s5,AL-Exome-CViB-AB-Jan28 - Zhang Lab Alice 60bp 2627559 86%
Feb 2 HL037 Exome s6,AL-Exome-CViB-CDE-Jan28 - Zhang Lab Alice 60bp 26225044 78%
Feb 2 HL037 DigiQ s7, AL-DigiQ-CViB-iF-Jan29/KZ-DigiQ-FS_300P-Jan27 - Zhang Lab Alice 60bp 461181
Feb 2 HL037 Exome s8,AL-Exome-FS-Jan26-Nimblegen - Zhang Lab Alice 60bp 20920646 90%
Jan 27 HL036 Exome s1,AL-Exome-DF-Jan26-Nimblegen - Zhang Lab Alice 60bp 29,983,562 86.81%
Jan 27 HL036 DigiQ s2,AL-DigiQ-CViB/iF-Jan26 - Zhang Lab Alice 60bp 884920
Jan 27 HL036 BSPP s3,JD-CPG97K-Harvard_Sample_B0134.1-Jan22 - Zhang Lab Jie 60bp 17,618,873 26%/68%(hg18)
Jan 27 HL036 Exome s4,AL-Exome-FS-Jan26-Nimblegen - Zhang Lab Alice 60bp 30,430,624 89.97%
Jan 27 HL036 BSPP s5,JD-CPG97K-Harvard_Sample_B0107.1-Jan22 - Zhang Lab Jie 60bp 13,332,549 34%/70%(hg18)
Jan 27 HL036 BSPP s6,JD-CPG97K-Harvard_Sample_B0108.1-Jan22 - Zhang Lab Jie 60bp 15,408,196 36%/72%(hg18)
Jan 27 HL036 DigiQ s7, AL-DigiQ-CVF-Jan26 - Zhang Lab Alice 60bp failed
Jan 27 HL036 BSPP s8,JD-CPG97k+30k-Breast_Cancer_01192B09-Jan15 - Zhang Lab Jie 60bp 17,643,295 14.5%/62%(hg18)
Jan 23 HL035 Exome s2,HMS-GC-Exome-PGP2 - Zhang Lab Alice 60bp 28,245,781
Jan 23 HL035 Exome s3,HMS-GC-Exome-PGP3 - Zhang Lab Alice 60bp 27,995,793
Jan 23 HL035 Exome s4,HMS-GC-Exome-PGP3 - Zhang Lab Alice 60bp 23,101,612
Jan 23 HL035 BSPP s5,JD-CPG97K-HarvardB0047.1-Jan22 - Zhang Lab Jie 60bp 10,279,091 17%
Jan 23 HL035 BSPP s6,JD-CPG97K+30K-HarvardB0060.1-Jan22 - Zhang Lab Jie 60bp 12,433,511 31%
Jan 23 HL035 BSPP s7,JD-CPG97K-HarvardB0070.1-Jan22 - Zhang Lab Jie 60bp 14,238,777 36%
Jan 23 HL035 Exome s8,AL-Exome-PGP7-Jan18 - Zhang Lab Alice 60bp 7,225,106
Jan 13 HL034 Exome s1,HMS-GC-Exome-PGP5-Oct09 - Zhang Lab Billy/Luhan 60bp 15,630,851
Jan 13 HL034 DigiQ s2,HMS-GC-Exome-PGP5-Oct09 - Zhang Lab Billy/Luhan 60bp 16,208,687
Jan 13 HL034 Exome s3,AL-Exome-CViB-Jan14-AB - Zhang Lab Alice 60bp 15,754,533
Jan 13 HL034 Ctrl s4,AL-Exome-CViB-Jan14-AB - Zhang Lab Alice 60bp 15,864,921
Jan 13 HL034 Exome s5,AL-Exome-CViB-Jan14-CDE - Zhang Lab Alice 60bp 15,761,086
Jan 13 HL034 Exome s6,AL-Exome-CViB-Jan14-CDE - Zhang Lab Alice 60bp 15,795,450
Jan 13 HL034 BSPP s7,JD-cpg97k+30k-BC-01230B09-Jan15 - Zhang Lab Jie 60bp 12,246,857 26%
Jan 13 HL034 Exome s8,HMS-GC-exome-Nim-GT - Zhang Lab Billy/Luhan 60bp 7,671,888
Jan 13 HL033 Exome s1,HMS-GC-exome-Nim-GT - Zhang Lab Billy/Luhan 60bp 9,619,807
Jan 13 HL033 DigiQ s2,KZ-DigiQ-DF-Jan11/AL-DigiQ-CVF-Jan12 - Zhang Lab Alice/Kun 60bp 5,020,038
Jan 13 HL033 BisExSeq s3,HL-BisExon-NA20431 - Zhang Lab Alan 60bp 11,363,087 75%
Jan 13 HL033 Ctrl s4,PhiX - Zhang Lab Illumina 60bp 4,589,847
Jan 13 HL033 Exome s5,AL-Exome-CViB-Jan12-AB - Zhang Lab Alice 60bp 1,647,688(overloaded)
Jan 13 HL033 Exome s6,AL-Exome-CViB-Jan12-CDE - Zhang Lab Alice 60bp 13,489(overloaded)
Jan 13 HL033 DigiQ s7, KZ-DigiQ-FS-Jan11/AL-DigiQ-CViB-Jan12 - Zhang Lab Alice/Kun 60bp 5,903,015
Jan 13 HL033 Exome s8, AL-Exome-CViB-Jan12-AB - Zhang Lab Kun 60bp 978,032(overloaded)
Jan 05 HL032 DigiQ s1,AL-DigiQ-CVF-Dec23 - Zhang Lab Alice 60bp 14,950,591
Jan 05 HL032 DigiQ s2,AL-DigiQ-CViB-Dec23 - Zhang Lab Alice 60bp 14,520,807
Jan 05 HL032 DigiQ s3,KZ-DigiQ-DF-Jan04 - Zhang Lab Kun 60bp 10,753,395
Jan 05 HL032 Ctrl s4,PhiX - Zhang Lab Illumina 60bp 25,057(bad DNA)
Jan 05 HL032 RRS s5,KZ-RRS-CVF1-Nov27 - Zhang Lab Kun 60bp 8,295,917
Jan 05 HL032 RRS s6,KZ-RRS-CViF1-Nov27 - Zhang Lab Kun 60bp 8,810,014
Jan 05 HL032 DigiQ s7, KZ-DigiQ-FS-Jan04 - Zhang Lab Kun 60bp 10,177,605
Jan 05 HL032 Exome s8,HMS-GC-PGP8A-Nov1 - Zhang Lab Billy/Luhan 60bp 13,216,056

2009

Jul-Dec

Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Dec 29 HL030 Exome s1,PGP9 - Zhang Lab Billy/Luhan 60bp 14,705,217
Dec 29 HL030 Exome s2,PGP9 - Zhang Lab Billy/Luhan 60bp 14,950,591
Dec 29 HL030 Exome s3,PGP9 - Zhang Lab Billy/Luhan 60bp 14,832,179
Dec 29 HL030 Exome s4,NA12878 - Zhang Lab Billy/Luhan 60bp 15,414,631
Dec 29 HL030 Exome s5,NA12878 - Zhang Lab Billy/Luhan 60bp 15,536,069
Dec 29 HL030 Exome s6,NA12878 - Zhang Lab Billy/Luhan 60bp 15,767,169
Dec 29 HL030 Hap s7, HC-MDA-hCell-Dec17-sam006 - Zhang Lab Sam(12/17/09) 60bp 15,094,541
Dec 29 HL030 ? s8,TM - Zhang Lab Palsson 60bp 2,384(Failed)
Dec 26 AL008 Hap s1, HC-MDA-hCell-Dec17-sam003 - Zhang Lab Sam(12/17/09) 60bp 15,826,724
Dec 26 AL008 Hap s2, HC-MDA-hCell-Dec17-sam004 - Zhang Lab Sam(12/17/09) 60bp 7,814,019
Dec 26 AL008 Hap s3, HC-MDA-hCell-Dec17-sam005 - Zhang Lab Sam(12/17/09) 60bp 4,516,674
Dec 26 AL008 DigiQuant s4,PCR-CV-iB(w/PhiX) - Zhang Lab Alice 60bp 5,625,091
Dec 26 AL008 BSPP s5,B2-175bp - Zhang Lab Ida 60bp 2,629,431 22%
Dec 26 AL008 BSPP s6,B2-200bp - Zhang Lab Ida 60bp 3,834,872 21%
Dec 26 AL008 BSPP s7,H2-175bp - Zhang Lab Ida 60bp 8,081,341 26%
Dec 26 AL008 BSPP s8,H2-200bp - Zhang Lab Ida 60bp 10,992,765 30%
Dec 22 AL007 DigiQuant s2,PCR-CV-hiPS-F - Zhang Lab Alice 60bp 0(overloaded)
Dec 22 AL007 Exome s3,CV-iB-ACE - Zhang Lab Kun 60bp 1,235,398
Dec 22 AL007 Exome s4,CV-iB-BD - Zhang Lab Kun 60bp 642,138
Dec 22 AL007 BSPP s5,Har1 - Zhang Lab Ida 60bp 6,610,330 12%
Dec 22 AL007 BSPP s6,Har2 - Zhang Lab Ida 60bp 5,347,364 20%
Dec 22 AL007 BSPP s7,Har3 - Zhang Lab Ida 60bp 15,243,209 26%
Dec 22 AL007 BSPP s8,Har4 - Zhang Lab Ida 60bp 14,904,014 24%
Dec 18 AL006 DigiQuant s2,PCR-CV-hiPS-F(w/phiX) - Zhang Lab Alice 60bp 18,527,480
Dec 18 AL006 RRS s3,DpnII-CV-Fibroblast1 - Zhang Lab Kun 60bp 9,278,480
Dec 18 AL006 RRS s4,DpnII-CV-hiPS-F - Zhang Lab Kun 60bp 7,530,675
Dec 18 AL006 Exome s5,PGP8C - Zhang Lab Billy/Luhan 60bp 11,320,511
Dec 18 AL006 Exome s6,PGP9 - Zhang Lab Billy/Luhan 60bp 7,466,479
Dec 18 AL006 BSPP s7,Har9 - Zhang Lab Jie 60bp 16,529,111 28%
Dec 18 AL006 BSPP s8,Har10 - Zhang Lab Jie 60bp 15,507,608 11%
Dec 09 HL029 Exome s1,PGP4, #8-9 - Zhang Lab Billy/Luhan 60bp 11,299,862
Dec 09 HL029 Exome s2,PGP6, #8-9 - Zhang Lab Billy/Luhan 60bp 10,572,824
Dec 09 HL029 Exome s3,PGP9 - Zhang Lab Billy/Luhan 60bp 9,577,578
Dec 09 HL029 Exome s4,PGP10,#8-9 - Zhang Lab Billy/Luhan 60bp 13,012,173
Dec 09 HL029 Exome s5,CV-hiPS-B - Zhang Lab Alan 60bp 16,316,464
Dec 09 HL029 Exome s6,CV-hiPS-B - Zhang Lab Alan 60bp 17,365,795
Dec 09 HL029 Exome s7,CV-hiPS-B - Zhang Lab Alan 60bp 16,012,994
Dec 09 HL029 Exome s8,CV-hiPS-B - Zhang Lab Alan 60bp 1,602,572
Dec 06 HL028 RRS s1,Dpn-CV-F2 - Zhang Lab Kun 60bp 7,073,505
Dec 06 HL028 RRS s2,Dpn-CV-F2 - Zhang Lab Kun 60bp 7,060,114
Dec 06 HL028 RRS s3,Dpn-CV-iF2 - Zhang Lab Kun 60bp 6,001,805
Dec 06 HL028 RRS s4,Dpn-CV-iF2 - Zhang Lab Kun 60bp 3,264,795
Dec 06 HL028 Exome s5,CV-iB (A,C) - Zhang Lab Billy/Luhan 60bp 7,511,894
Dec 06 HL028 Exome s6,PGP8D - Zhang Lab Billy/Luhan 60bp 9,310,623
Dec 06 HL028 Exome s7,PGP8E - Zhang Lab Billy/Luhan 60bp 11,224,269
Dec 06 HL028 Exome s8,PGP8 - Zhang Lab Billy/Luhan 60bp 5,999,123
Dec 02 HL027 RRS s1,Dpn-CV-iB1 - Zhang Lab Kun 60bp 10,747,192
Dec 02 HL027 RRS s2,Dpn-CV-iF1 - Zhang Lab Kun 60bp 9,030,411
Dec 02 HL027 RRS s3,Dpn-CV-F1 - Zhang Lab Kun 60bp 9,935,148
Dec 02 HL027 RRS s4,CV-iB (A,C) - Zhang Lab Alan 60bp 13,456,232
Dec 02 HL027 Exome s5,CV-iB (A,C) - Zhang Lab Alan 60bp 13,137,026
Dec 02 HL027 Exome s6,CV-iB (B,D,E) - Zhang Lab Alan 60bp 16,102,120
Dec 02 HL027 Exome s7,CV-iB (B,D,E) - Zhang Lab Alan 60bp 15,933,168
Dec 02 HL027 Exome s8,PGP8a - Zhang Lab Billy/Luhan 60bp 11,956,198
Nov 27 HL026 Exome s1,CV-fibroblast (Alice) - Zhang Lab Alan 60bp 17,121,798
Nov 27 HL026 Exome s2,CVF-N(Covaris) - Zhang Lab Alan 60bp 12,577,956
Nov 27 HL026 Exome s3,CVF-N(Covaris) - Zhang Lab Alan 60bp 11,767,869
Nov 27 HL026 Exome s4,CVF-N(Covaris) - Zhang Lab Alan 60bp 12,212,818
Nov 27 HL026 Exome s5,CV-iPS (#1-7) - Zhang Lab Alan 60bp 18,413,190
Nov 27 HL026 Exome s6,DF6(#1-7) - Zhang Lab Alan 60bp 18,035,161
Nov 27 HL026 Exome s7,Foreskin(#1-7) - Zhang Lab Alan 60bp 17,939,296
Nov 27 HL026 Exome s8,CVF-N(USER/S1, A/B) - Zhang Lab Alan 60bp 9,364,209
Nov 27 HL025 Exome s1,PGP3 #8-9 - Zhang Lab Alan 60bp 9,106,173
Nov 27 HL025 Exome s2,PGP5 #8-9 - Zhang Lab Alan 60bp 10,174,527
Nov 23 HL025 Exome s3,PGP7 #8-9 - Zhang Lab Alan 60bp 16,653,644
Nov 23 HL025 Exome s4,CpgSeq Harvard #2 - Zhang Lab Jie 60bp failed
Nov 23 HL025 Exome s5,CpgSeq Harvard #5 - Zhang Lab Jie 60bp 12914061
Nov 23 HL025 Exome s6,CV-fibroblast #1-7 (Alice) - Zhang Lab Alan 60bp 17,745,112
Nov 23 HL025 Exome s7,CV-iPS #1-7 (Alice) - Zhang Lab Alan 60bp 18,466,358
Nov 23 HL025 Exome s8,CV-fibroblast New (#6-7) - Zhang Lab Alan 60bp 10,392,332
Nov 19 HL024 Exome s1,PGP1L, set 1-7 - Zhang Lab Alice(10/28) 60bp 16,060,639
Nov 19 HL024 Exome s2,PGP1L, set 1-7 - Zhang Lab Alice(10/28) 60bp 16,406,685
Nov 19 HL024 Exome s3,PGP1L, set 8 - Zhang Lab Alice(10/28) 60bp 13,861,016
Nov 19 HL024 Exome s4,PGP1L, set 9 - Zhang Lab Alice(10/28) 60bp 12,455,546
Nov 19 HL024 Hap s5,N12 - Zhang Lab Sam 60bp 11,320,511
Nov 19 HL024 Exome s6,PGP8B - Zhang Lab Billy/Luhan 60bp 7,466,479
Nov 19 HL024 BCM s7,P1 (Baylor) - Zhang Lab Baylor 60bp 4,934,597
Nov 19 HL024 BCM s8,P4 (Baylor) - Zhang Lab Baylor 60bp 1,602,572
Nov 13 HL023 Exome s1,PGP1-iPS, set 1-7 - Zhang Lab Alan(11/05) 60bp 12,404,414
Nov 13 HL023 Exome s2,PGP1-iPS, set 1-7 - Zhang Lab Alan(11/05) 60bp 13,314,169
Nov 13 HL023 Exome s3,PGP1-iPS, set 8 - Zhang Lab Alan(11/05) 60bp 16,787,057
Nov 13 HL023 Exome s4,PGP1-iPS, set 9 - Zhang Lab Alan(11/05) 60bp 15,362,879
Nov 13 HL023 Exome s5,DF6-9-9, set 8 - Zhang Lab Alice(10/28) 60bp 16,614,857
Nov 13 HL023 Exome s6,DF6-9-9, set 9 - Zhang Lab Alice(10/28) 60bp 16,897,414
Nov 13 HL023 Exome s7,Foreskin, set 8 - Zhang Lab Alice(10/28) 60bp 16,023,565
Nov 13 HL023 Exome s8,Foreskin, set 9 - Zhang Lab Alice(10/28) 60bp 10,656,758
Nov 09 HL022 Exome s1,DF6-9-9, set 1-7 - Zhang Lab Alice(10/28) 60bp 12,652,000
Nov 09 HL022 Exome s2,DF6-9-9, set 1-7 - Zhang Lab Alice(10/28) 60bp 11,579,830
Nov 09 HL022 Exome s3,Foreskin, set 1-7 - Zhang Lab Alice(10/28) 60bp 9,624,602
Nov 09 HL022 Exome s4,Foreskin, set 1-7 - Zhang Lab Alice(10/28) 60bp 8,249,755
Nov 09 HL022 Exome s5,CV-iPS (new), set 1-7 - Zhang Lab Alan(11/05) 60bp 10,237,538
Nov 09 HL022 Exome s6,CV-iPS (new), set 1-7 - Zhang Lab Alan(11/05) 60bp 10,621,342
Nov 09 HL022 Exome s7,CV-iPS (new), set 1-7 - Zhang Lab Alan(11/05) 60bp 14,439,349
Nov 09 HL022 Exome s8, ChrWGA-N10 - Zhang Lab Sam 60bp 8,624,207
Oct 29 HL020 Exome s1,CV-iPS, set 8 - Zhang Lab Alice(10/28) 60bp 15,416,990
Oct 29 HL020 Exome s2,CV-iPS, set 9 - Zhang Lab Alice(10/28) 60bp 17,569,551
Oct 29 HL020 Exome s3,CV-fibroblast, set 8 - Zhang Lab Alice(10/28) 60bp 16,895,701
Oct 29 HL020 Exome s4,CV-fibroblast, set 9 - Zhang Lab Alice(10/28) 60bp 15,502,227
Oct 29 HL020 Exome s5,NA12878, set 8 - Zhang Lab Alice(10/28) 60bp 16,231,983
Oct 29 HL020 Exome s6,NA12878, set 8 - Zhang Lab Alice(10/28) 60bp 17,231,313
Oct 29 HL020 Exome s7,NA12878, set 9 - Zhang Lab Alice(10/28) 60bp 16,903,121
Oct 29 HL020 Exome s8,NA12878, set 9 - Zhang Lab Alice(10/28) 60bp 13,743,218
Oct 26 HL019 CTM s1,PGP1L-CTM1(HpaII) - Zhang Lab Zymo 40bp
Oct 26 HL019 CTM s2,PGP1L-CTM2(MspI) - Zhang Lab Zymo 40bp
Oct 26 HL019 CTM s3,PGP1L-CTM3(4-RE) - Zhang Lab Zymo 40bp
Oct 26 HL019 Exome s4,PGP4 - Zhang Lab Billy 40bp
Oct 26 HL019 Exome s5,PGP4 - Zhang Lab Billy 40bp
Oct 26 HL019 Exome s6,PGP6 - Zhang Lab Billy 40bp
Oct 26 HL019 Exome s7,PGP6 - Zhang Lab Billy 40bp
Oct 26 HL019 Exome s8,PGP10 - Zhang Lab Billy 40bp
Oct 23 HL018 Exome s1,PGP1-iPS - Zhang Lab Alice(10/09) 40bp 14,503,245
Oct 23 HL018 Exome s2,PGP1-iPS - Zhang Lab Alice(10/09) 40bp 14,834,731
Oct 23 HL018 Exome s3,NA12878_EL_140.2 - Zhang Lab Kun 40bp 16,130,004
Oct 23 HL018 Exome s4,NA12878_EL_140.2 - Zhang Lab Kun 40bp 16,868,359
Oct 23 HL018 Exome s5,NA12878_EL_140.2 - Zhang Lab Kun 40bp 18,464,088
Oct 23 HL018 Exome s6,NA12878_EL_140.2 - Zhang Lab Kun 40bp 18,744,329
Oct 23 HL018 Exome s7,CV-iPS - Zhang Lab Alice(10/09) 40bp 17,369,523
Oct 23 HL018 Exome s8,CV-Fibroblast - Zhang Lab Alice(10/09) 40bp 15,991,415
Oct 20 HL017 Exome s1,PGP1-iPS - Zhang Lab Alice(10/09) 40bp 16,124,303
Oct 20 HL017 Exome s2,DF6-9-9 - Zhang Lab Alice(10/09) 40bp 18,701,054
Oct 20 HL017 Exome s3,Foreskin - Zhang Lab Alice(10/09) 40bp 17,660,876
Oct 20 HL017 Exome s4,CV-iPS - Zhang Lab Alice(10/09) 40bp 17,798,921
Oct 20 HL017 Exome s5,CV-iPS - Zhang Lab Alice(10/09) 40bp 18,054,888
Oct 20 HL017 Exome s6,CV-fibroblast - Zhang Lab Alice(10/09) 40bp 18,120,291
Oct 20 HL017 Exome s7,NA12878_EL_140.2 - Zhang Lab Kun 40bp 17,106,926
Oct 20 HL017 Exome s8,NA12878_EL_140.3 - Zhang Lab Kun 40bp 17,261,477
Oct 18 HL016 Exome s1,CV-fibroblast - Zhang Lab Alice(10/09) 40bp 15,670,145
Oct 18 HL016 Exome s2,CV-fibroblast - Zhang Lab Alice(10/09) 40bp 15,907,544
Oct 18 HL016 Exome s3,CV-iPS - Zhang Lab Alice(10/09) 40bp 15,818,281
Oct 18 HL016 Exome s4,CV-iPS - Zhang Lab Alice(10/09) 40bp 16,080,730
Oct 18 HL016 Exome s5,DF6 - Zhang Lab Alice(10/09) 40bp 16,231,745
Oct 18 HL016 Exome s6,DF6 - Zhang Lab Alice(10/09) 40bp 16,377,593
Oct 18 HL016 Exome s7,Foreskin - Zhang Lab Alice(10/09) 40bp 15,732,166
Oct 18 HL016 Exome s8,Foreskin - Zhang Lab Alice(10/09) 40bp 15,019,512
Oct 15 HL015 Exome s1,PGP8 - Zhang Lab Billy 40bp 13,429,437
Oct 15 HL015 Exome s2,PGP8 - Zhang Lab Billy 40bp 13,978,474
Oct 15 HL015 Exome s3,PGP8 - Zhang Lab Billy 40bp 13,935,910
Oct 15 HL015 Exome s4,PGP9 - Zhang Lab Billy 40bp 13,692,249
Oct 15 HL015 Exome s5,PGP9 - Zhang Lab Billy 40bp 12,912,972
Oct 15 HL015 Exome s6,PGP9 - Zhang Lab Billy 40bp 12,823,767
Oct 15 HL015 Exome s7,NA12878 - Zhang Lab Billy 40bp 16,883,674
Oct 15 HL015 Exome s8,NA12878 - Zhang Lab Billy 40bp 15,379,183
Oct 12 HL014 Exome s1,DF6-9-9 - Zhang Lab Alice(10/09) 40bp 8,305,141
Oct 12 HL014 Exome s2,foreskin - Zhang Lab Alice(10/09) 40bp 8,488,946
Oct 12 HL014 Exome s3,PGP1-ips - Zhang Lab Alice(10/09) 40bp 5,966,433
Oct 12 HL014 Exome s4,CV-ips - Zhang Lab Alice(10/09) 40bp 4,351,085
Oct 12 HL014 Exome s5,CV-fibroblast - Zhang Lab Alice(10/09) 40bp 3,621,861
Oct 12 HL014 Exome s6,PGP7 - Zhang Lab Alice(10/09) 40bp 11,805,391
Oct 12 HL014 Exome s7,PGP8 - Zhang Lab Billy 40bp 14,330,453
Oct 12 HL014 Exome s8,PGP9 - Zhang Lab Billy 40bp 12,477,329
Oct 08 HL013 Exome s1,PGP1 - Zhang Lab Billy 40bp 14872773
Oct 08 HL013 Exome s2,PGP2 - Zhang Lab Billy 40bp 13777534
Oct 08 HL013 Exome s3,PGP3 - Zhang Lab Billy 40bp 10536677
Oct 08 HL013 Exome s4,PGP5 - Zhang Lab Billy 40bp 8445974
Oct 08 HL013 BSPP-30k s5,DF6-9-9-cpg30k - Zhang Lab Ida 40bp 9684020
Oct 08 HL013 BSPP-30k s6,Foreskin - Zhang Lab Ida 40bp 13740681
Oct 08 HL013 USC-Hsieh s7,USC,MH010B xMboI - Zhang Lab Kyle 40bp 18388915
Oct 08 HL013 USC-Hsieh s8,USC,TCF #3 - Zhang Lab Kyle 40bp 14866071
Oct 05 HL011 Exome s1,PGP8 - Zhang Lab Billy 40bp
Oct 05 HL011 Exome s2,PGP8 - Zhang Lab Billy 40bp
Oct 05 HL011 Exome s3,PGP9 - Zhang Lab Billy 40bp
Oct 05 HL011 Exome s4,PGP9 - Zhang Lab Billy 40bp
Oct 05 HL011 Exome s5,NA12878 - Zhang Lab Billy 40bp
Oct 05 HL011 Exome s6,NA12878 - Zhang Lab Billy 40bp
Oct 05 HL011 USC-Hsieh s7,USC,MH010B xMboI - Zhang Lab Kyle 40bp
Oct 05 HL011 USC-Hsieh s8,USC,TCF #3 - Zhang Lab Kyle 40bp
Oct 01 HL012 Exome s1,CV-ips (unsheared) - Zhang Lab Alice&Ida 80bp 16,072,089
Oct 01 HL012 Exome s2,CV-Fibr(unsheared) - Zhang Lab Alice&Ida 80bp 16,826,803
Oct 01 HL012 Exome s3,NA21687, Cpg97k - Zhang Lab Ida 80bp 8,235,105
Oct 01 HL012 Exome s4,PhiX - Zhang Lab Illumina 80bp 14,496,850
Oct 01 HL012 Exome s5,NA21781 - Zhang Lab Ida 80bp 0
Oct 01 HL012 Exome s6,NA21833 - Zhang Lab Ida 80bp 3,293,913
Oct 01 HL012 Exome s7,NA21660 - Zhang Lab Ida 80bp 8,297
Oct 01 HL012 Exome s8,NA21731 - Zhang Lab Ida 80bp 11,048,272
Sept 26 HL010 Exome s1,CV-ips - Zhang Lab Alice(09/21) 40bp 17,770,197 13,270,733
Sept 26 HL010 Exome s2,CV-ips - Zhang Lab Alice 40bp 17,143,085
Sept 26 HL010 Exome s3,CV-fibroblast - Zhang Lab Alice(09/21) 40bp 14,248,797
Sept 26 HL010 Exome s4,CV-fibroblast - Zhang Lab Alice(09/21) 40bp 13,741,749
Sept 26 HL010 Exome s5,DF6-9-9 - Zhang Lab Alice(09/21) 40bp 14,210,912
Sept 26 HL010 Exome s6,foreskin - Zhang Lab Alice(09/21) 40bp 14,514,230
Sept 26 HL010 Exome s7,PGP8 - Zhang Lab Billy 40bp 11,980,992
Sept 26 HL010 Exome s8,PGP9 - Zhang Lab Billy 40bp 13,292,848
Sept 23 AL003 Exome s1,DF6-9-9 - Zhang Lab Alice(09/21) 40bp 16,395,953 13,954,426
Sept 23 AL003 Exome s2,foreskin - Zhang Lab Alice(09/21) 40bp 17,323,121 14,344,756
Sept 23 AL003 Exome s3,PGP1-ips - Zhang Lab Alice(09/21) 40bp 17,005,060
Sept 23 AL003 Exome s4,CV-ips - Zhang Lab Alice(09/21) 40bp 17,848,289 13,344,177
Sept 23 AL003 Exome s5,CV-fibroblast - Zhang Lab Alice(09/21) 40bp 18,152,672 15,372,979
Sept 23 AL003 Exome s6,NA12878-3 - Zhang Lab Alice(09/21) 40bp 18,391,593 14,109,009
Sept 23 AL003 USC-Hsieh s7,DK4#2 - Zhang Lab Kyle 40bp 13,632,900 11,976,351
Sept 23 AL003 USC-HSieh s8,TK9 - Zhang Lab Kyle 40bp 16,272,821 15,168,255
Sept 18 AL002 Exome s1,DF6-9-9 - Zhang Lab Alice(09/15) 40bp 16,173,475
Sept 18 AL002 Exome s2,foreskin - Zhang Lab Alice(09/15) 40bp 10,863,012
Sept 18 AL002 Exome s3,CV-ips - Zhang Lab Alice(09/15) 40bp 8,306,219
Sept 18 AL002 Exome s4,CV-fibroblast - Zhang Lab Alice(09/15) 40bp 3,987,069
Sept 18 AL002 - s5,PhiX-2nd - Zhang Lab Alice 40bp -
Sept 18 AL002 USC-Hsieh s6,MH001 H2 xHeaIII - Zhang Lab Kyle 40bp 19,490,463 18,566,845
Sept 18 AL002 USC-Hsieh s7,MH010B xDpnI - Zhang Lab Kyle 40bp 19,160,830 18,435,611
Sept 18 AL002 USC-Hsieh s8,Tk4 #2 - Zhang Lab Kyle 40bp 16,343,257 15,039,726
Sept 11 AL001 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 5,115,027
Sept 11 AL001 Exome s2,foreskin - Zhang Lab Alice 40bp 1,480,281
Sept 11 AL001 - s3,PhiX-2nd(re-amplified) - Zhang Lab Alice 40bp 12,640,504
Sept 11 AL001 - s4,PhiX - Zhang Lab - 40bp 12,737,950
Sept 11 AL001 BSPP s5,Na21660-cpg97k - Zhang Lab Jie 40bp 1,624,500 15%
Sept 11 AL001 BSPP s6,DFips-cpg30k+97k - Zhang Lab Jie 40bp 12,230,825 52%
Sept 11 AL001 USC-Hsieh s7,MH010B x DpnI - Zhang Lab Kyle 40bp -
Sept 11 AL001 USC-Hsieh s8,Pol II - Zhang Lab Kyle 40bp 7,545,937 4,581,330
Sept 07 HL007 Exome s1,PGP4 - Zhang Lab Billy 36bp 12,221,023 -
Sept 07 HL007 Exome s2,PGP4 - Zhang Lab Billy 36bp 12,462,164 -
Sept 07 HL007 Exome s3,PGP6 - Zhang Lab Billy 36bp 12,781,093 -
Sept 07 HL007 Exome s4,PGP6 - Zhang Lab Billy 36bp 13,207,084 -
Sept 07 HL007 Exome s5,PGP10 - Zhang Lab Billy 36bp 11,853,340 -
Sept 07 HL007 Exome s6,PGP10 - Zhang Lab Billy 36bp 12,091,086 -
Sept 07 HL007 BSPP-97k s7,50192A - Zhang Lab Jie 36bp 17,131,060 29%
Sept 07 HL007 BSPP-97k s8,50192B - Zhang Lab Jie 36bp 16,378,655 28%
August 29 HL009-3 Exome s1,DF6-9-9 60nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s2,DF6-9-9 60nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s3,foreskin 45nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s4,foreskin 45nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s5,PGP1-ips 38nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s6,CV-ips 90nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s7,CV-fibroblast 76nM Zhang Lab Alice 40bp -
August 29 HL009-3 Exome s8,PGP1 34nM Zhang Lab Alice 40bp -
August 26 HL008 Exome s1,PGP4 - Zhang Lab Billy 40bp 14295243 -
August 26 HL008 Exome s2,PGP6 - Zhang Lab Billy 40bp 15558898 -
August 26 HL008 Exome s3,PGP10 - Zhang Lab Billy 40bp 15871619 -
August 26 HL008 BSPP-97k s4,50192A - Zhang Lab Jie 40bp 10401608 -
August 26 HL008 BSPP-97k s5,50192B - Zhang Lab Jie 40bp 9693893 -
August 26 HL008 Exome s6,Foreskin - Zhang Lab Alice 40bp 14739764 -
August 26 HL008 Exome s7,PGP4(MmeI) - Zhang Lab Billy 40bp 12106286 -
August 26 HL008 Control s8,PhiX - Zhang Lab Illumina 40bp 10161944 -
August 16 HL006 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 5,684,406 -
August 16 HL006 Exome s2,Foreskin - Zhang Lab Alice 40bp 8,009,671 -
August 16 HL006 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 8,369,819 -
August 16 HL006 Exome s4,NA12878 - Zhang Lab Alice 40bp 7,487,512 -
August 16 HL006 Exome s5,NA12878-lig - Zhang Lab Alice 40bp 8,411,077 -
August 16 HL006 Exome s6,NA12878 - Zhang Lab Billy 40bp 8,556,271 -
August 16 HL006 Exome s7,PGP10 - Zhang Lab Billy 40bp 9,736,297 -
August 16 HL006 Control s8,PhiX - Zhang Lab Illumina 40bp 6,985,337 -
August 13 HL005 Exome NA12878 - Zhang lab Billy 40bp 15,666,228
August 13 HL005 Exome NA12878 - Zhang lab Billy 40bp 14,091,504
August 13 HL005 BSPP-97k Par1 - Zhang lab Jie Deng 40bp 10,385,536 3,005,889 12%
August 13 HL005 BSPP-97k Par9 - Zhang lab Jie Deng 40bp 7,537,771 3,430,524 21%
August 13 HL005 USC-Hsieh MH010B xMboI - Zhang lab Kyle 40bp 6,699,431 6,125,263
August 13 HL005 USC-Hsieh MH010B xDpnI - Zhang lab Kyle 40bp 2,204,512 2,094,844
August 13 HL005 Exome(end-sequencing) PGP2S-Phu 54.5nM Zhang lab Alice Li 40bp 7,022,465 5,950,793
August 13 HL005 Exome(end-sequencing) PGP2S-iProof 60.6nM Zhang lab Alice Li 40bp 5,798,969 4,756,952
August 09 HL004 Exome s1,DF6-9-9-lig - Zhang Lab Alice 40bp 17,147,112 -
August 09 HL004 Exome s2,DF6-9-9-lig - Zhang Lab Alice 40bp 16,956,048 -
August 09 HL004 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 16,802,403 -
August 09 HL004 Exome s4,PGP10 - Zhang Lab Billy 40bp 18,644,730 -
August 09 HL004 Exome s5,PGP4 - Zhang Lab Billy 40bp 18,809,762 -
August 09 HL004 Exome s6,PGP4 - Zhang Lab Billy 40bp 18,970,955 -
August 09 HL004 Exome s7,PGP6 - Zhang Lab Billy 40bp 18,723,412 -
August 09 HL004 Exome s8,PGP6 - Zhang Lab Billy 40bp 19,233,480 -
August 05 HL003 Exome s1,DF6-9-9 - Zhang Lab Alice 40bp 4,417,586 2,288,789
August 05 HL003 Exome s2,Foreskin - Zhang Lab Alice 40bp 5,020,353 3,214,546
August 05 HL003 Exome s3,Foreskin-lig - Zhang Lab Alice 40bp 6,660,328 3,119,331
August 05 HL003 Exome s4,NA12878 - Zhang Lab Alice 40bp 3,727,520 1,981,326
August 05 HL003 Exome s5,NA12878-lig - Zhang Lab Alice 40bp 6,455,281 3,253,093
August 05 HL003 Exome s6,NA12878 - Zhang Lab Billy 40bp 14,992,076 8,643,897
August 05 HL003 Exome s7,PGP10 - Zhang Lab Billy 40bp 19,423,381 11,040,240
August 05 HL003 Control s8,PhiX - Zhang Lab Illumina 40bp 20,078,536 19,817,515
July 28 HL002 Exome s1,PhiX - Zhang Lab Illumina 40bp 19474917 -
July 28 HL002 Exome s2,Hues 6 ES-Dscp - Zhang Lab Kun 40bp 9991852 -
July 28 HL002 Exome s3,Hues 6 ES-trp - Zhang Lab Kun 40bp 8386791 -
July 28 HL002 Exome s4,NA12878 - Zhang Lab Alice 40bp 15015962 -
July 28 HL002 Exome s5,NA12878 - Zhang Lab Alice 40bp 15092576 -
July 28 HL002 Exome s6,NA12878 - Zhang Lab Alice 40bp 15223607 -
July 28 HL002 Exome s7,PGP10 - Zhang Lab Alice 40bp 15059266 -
July 28 HL002 RNA s8,CES8k-Hybrid1-ES - Zhang Lab Kun 40bp 8178891 -

Jan-Jun

Month Date Probe Set Tube label Conc. x vol. Seq facility Lib. Const. Read length # filtered reads # mappable reads
Feb 6 BSPP-30k-PE BJ 75.4nM x 15ul; BioGem Jie 36bp x 2 7,662,828 2,535,784
Feb 6 BSPP-30k-PE Hybrid_1 87.6nM x 15ul; BioGem Jie 36bp x 2 6,829,142 1,946,531
Feb 6 BSPP-30k-PE PGP1_F 106nM x 15ul; BioGem Jie 36bp x 2 8,441,376 2,854,604
Feb 6 BSPP-30k-PE HUES12 74.9nM x 15ul; BioGem Jie 36bp x 2 7,404,514 1,424,697
Feb 6 BSPP-30k-PE PGP1_iPS1 90.3nM x 15ul; BioGem Jie 36bp x 2 5,617,832 1,899,427
Feb 6 BSPP-30k-PE PGP1_L 77.6nM x 15ul; BioGem Jie 36bp x 2 5,258,188 2,220,886
Feb 6 BSPP-30k-PE PGP3_L 80.9nM x 15ul; BioGem Jie 36bp x 2 5,286,442 1,838,971
Feb 6 BSPP-30k-PE PGP9_L 96.9nM x 15ul; BioGem Jie 36bp x 2 5,689,552 2,292,028
March 13 Exome PGP1-CTRL 48.5ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,707,995 7,655,774
March 13 Exome PGP1-shaked 46ng/ul; 30ul Billy Li (Harvard) Alice Li 40bp 9,424,752 7,561,445
May 25 Exome PGP1E0509A 77nM; 40ul BioGem Alice Li 76bp 7,471,741 1,086,264
May 25 Exome PGP2E0509A 64nM; 40ul BioGem Alice Li 76bp 5,014,823 2,595,521
May 25 Exome PGP3E0509A 49.5nM; 40ul BioGem Alice Li 76bp 5,358,442 3,213,790
May 25 Exome NA12878E0509A 60nM; 40ul BioGem Alice Li 76bp 7,360,495 2,673,495
May 25 Exome PGP1E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,520,981 2,350,708
May 25 Exome PGP2E0509k 20nM; 40ul BioGem Kun Zhang 76bp 5,095,881 2,568,349
May 25 Exome PGP3E0509k 19nM; 40ul BioGem Kun Zhang 76bp 3,734,068 1,989,542
May 25 Exome NA12878E0509k 33nM; 40ul BioGem Kun Zhang 76bp 3,900,764 778,134
May 26 BSPP_end seq NA21070*1 100406 captured targets 25.3ng/ul (96nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,535,463
May 26 BSPP_end seq NA21070*1 100406 normalized captured targets 23.1ng/ul (87nM) x 15ul; Yuan Gao Jie/Kun 40bp 2,377,687
May 29 Exome(end sequencing) PGP2_052909A 111nM; 15ul Yuan Gao Alice Li 40bp 6,390,979
May 29 Exome(end sequencing) PGP3_052909A 126nM; 15ul Yuan Gao Alice Li 40bp 6,110,991
June 4 Exome PGP5-1-060809 62.5nM; 10ul BioGem Alice Li 36bp 14,404,283 10,812,047
June 4 Exome PGP5-2-060809 65.7nM; 10ul BioGem Alice Li 36bp 14,994,770 11,253,456
June 4 Exome PGP7-1-060809 75.5nM; 10ul BioGem Alice Li 36bp 13,384,832 9,712,648
June 4 Exome PGP7-2-060809 79.7nM; 20ul BioGem Alice Li 36bp 14,204,382/13,509,137 10,519,374/9,961,481
June 8 BSPP DF6-9-9_P16(4) 11nM x 10ul x 2 lanes; BioGem Jie 36bp 4,688,926
June 8 BSPP foreskin 15nM x 10ul x 1 lane. BioGem Jie 36bp 3,320,865 1,825,557
June 10 Exome PGP1-3-061009 34nM; 15ul Bing Ren Alice Li 76bp 5,802,565
June 10 Exome PGP2-3-061009 25nM; 15ul Bing Ren Alice Li 76bp 3,193,644
June 10 Exome PGP3-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 2,465,788
June 10 Exome NA12878-3-061009 22nM; 15ul Bing Ren Alice Li 76bp 1,285,265
June 10 BSPP NA21070*1_100406_97k 21.2nM x 14ul; Bing Ren Jie 76bp 2,682,703 424,191
June 10 BSPP DF6-9-9_P16(4)_30k 21.2nM x 14ul; Bing Ren Jie 76bp 918,811 151,519
June 10 BSPP foreskin_30k 21.2nM x 14ul; Bing Ren Jie 76bp 424,770 65,177
June 18 Exome PGP5-1-060809 62.5nM; 5ul Bing Ren Alice Li 41bp 4,122,460
June 18 Exome PGP5-2-060809 65.7nM; 5ul Bing Ren Alice Li 41bp 3,907,906
June 18 Exome PGP7-1-060809 75.5nM; 5ul Bing Ren Alice Li 41bp 1,419,496
June 18 CES27k9bp_end sequening Hybrid_1_CES27k9bp 4.3ng/ul (37nM) x 5ul Bing Ren Jie 41bp 7,484,832
June 18 CES27k9bp_end sequening BJ_CES27k9bp 7.2ng/ul (62nM) x 5ul Bing Ren Jie 41bp 5,643,984
June 18 BSPP DF6-9-9_P16(4)_97k_repeat 11nM x 5ul Bing Ren Jie 41bp 4,761,133
June 18 BSPP foreskin_97k_repeat 7.5nM x 5ul Bing Ren Jie 41bp 6,683,303