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| align="center" style="background:#f0f0f0;"|'''Read length''' | | align="center" style="background:#f0f0f0;"|'''Read length''' | ||
| align="center" style="background:#f0f0f0;"|'''# filtered reads (bps)''' | | align="center" style="background:#f0f0f0;"|'''# filtered reads (bps)''' | ||
|- | |||
| 100601||HL056||S1||Al-Exome-121BP-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S2||Al-Exome-139TS-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S3||AL-Exome-56JW-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S4||Al-Exome-121DB-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S5||Al-Exome-56WW-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S6||AL-Exome-139TD-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S7||AL-Exome-125GA-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100601||HL056||S8||Al-Exome-125DC-May3-Vanderbilt||Zhang Lab||80|| | |||
|- | |||
| 100523||HL055||S1||Al-Exome-121BP-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S2||Al-Exome-139TS-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S3||AL-Exome-56JW-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S4||Al-Exome-121DB-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S5||Al-Exome-56WW-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S6||AL-Exome-139TD-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S7||AL-Exome-125GA-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100523||HL055||S8||Al-Exome-125DC-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S1||Al-Exome-121BP-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S2||Al-Exome-139TS-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S3||AL-Exome-134GA-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S4||AL-Exome-134LM-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S5||Al-Exome-56WW-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S6||AL-Exome-139TD-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S7||AL-Exome-125GA-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100514||HL054||S8||Al-Exome-125DC-May3-Vanderbilt||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S1||AL-Exome-CViB-Apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S2||AL-Exome-CViF-Apr25||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S3||AL-Exome-DF-Apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S4||AL-Exome-FS-Apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S5||AL-Exome-hFib11-apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S6||HC-MDA_Mouse_2h_c4-Mar02||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S7||AL-Exome-ips17a-Apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100503||HL053||S8||AL-Exome-ips17b-Apr23||Zhang Lab||80X2|| | |||
|- | |||
| 100429||HL052||S1||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S2||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S3||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S4||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S5||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S6||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S7||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100429||HL052||S8||PhiX||Zhang Lab||18X2|| | |||
|- | |||
| 100425||DD002||S1||AL-Exome-CV1-Apr22-Nimblegen||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S2||JD-BSPP-Cmm09A-Oct4GFPiPs-Apr8-iPS||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S3||JD-BSPP-Cmm09A-mousePGC-Apr8-PGC||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S4||AL-Exome-CV1-Apr22-Nimbegen||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S5||DD-BSPP-CpG97K-AG01972p18-Apr22-A1||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S6||DD-BSPP-CpG97K-AG114p8p13-Apr22-A2||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S7||DD-BSPP-CpG97K-H9-Apr22||Zhang Lab||80|| | |||
|- | |||
| 100425||DD002||S8||DD-BSPP-CpG97K-BJp13-Apr22-BJ||Zhang Lab||80|| | |||
|- | |- | ||
| 100420||HL051||S1||Zymo-M1-Apr16||Zhang Lab||40||457,916,000 | | 100420||HL051||S1||Zymo-M1-Apr16||Zhang Lab||40||457,916,000 |
Revision as of 00:38, 2 June 2010
2010
Jan-Jun
Date | Run | Lane | Tube Label | Seq facility | Read length | # filtered reads (bps) |
100601 | HL056 | S1 | Al-Exome-121BP-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S2 | Al-Exome-139TS-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S3 | AL-Exome-56JW-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S4 | Al-Exome-121DB-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S5 | Al-Exome-56WW-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S6 | AL-Exome-139TD-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S7 | AL-Exome-125GA-May3-Vanderbilt | Zhang Lab | 80 | |
100601 | HL056 | S8 | Al-Exome-125DC-May3-Vanderbilt | Zhang Lab | 80 | |
100523 | HL055 | S1 | Al-Exome-121BP-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S2 | Al-Exome-139TS-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S3 | AL-Exome-56JW-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S4 | Al-Exome-121DB-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S5 | Al-Exome-56WW-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S6 | AL-Exome-139TD-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S7 | AL-Exome-125GA-May3-Vanderbilt | Zhang Lab | 80X2 | |
100523 | HL055 | S8 | Al-Exome-125DC-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S1 | Al-Exome-121BP-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S2 | Al-Exome-139TS-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S3 | AL-Exome-134GA-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S4 | AL-Exome-134LM-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S5 | Al-Exome-56WW-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S6 | AL-Exome-139TD-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S7 | AL-Exome-125GA-May3-Vanderbilt | Zhang Lab | 80X2 | |
100514 | HL054 | S8 | Al-Exome-125DC-May3-Vanderbilt | Zhang Lab | 80X2 | |
100503 | HL053 | S1 | AL-Exome-CViB-Apr23 | Zhang Lab | 80X2 | |
100503 | HL053 | S2 | AL-Exome-CViF-Apr25 | Zhang Lab | 80X2 | |
100503 | HL053 | S3 | AL-Exome-DF-Apr23 | Zhang Lab | 80X2 | |
100503 | HL053 | S4 | AL-Exome-FS-Apr23 | Zhang Lab | 80X2 | |
100503 | HL053 | S5 | AL-Exome-hFib11-apr23 | Zhang Lab | 80X2 | |
100503 | HL053 | S6 | HC-MDA_Mouse_2h_c4-Mar02 | Zhang Lab | 80X2 | |
100503 | HL053 | S7 | AL-Exome-ips17a-Apr23 | Zhang Lab | 80X2 | |
100503 | HL053 | S8 | AL-Exome-ips17b-Apr23 | Zhang Lab | 80X2 | |
100429 | HL052 | S1 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S2 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S3 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S4 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S5 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S6 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S7 | PhiX | Zhang Lab | 18X2 | |
100429 | HL052 | S8 | PhiX | Zhang Lab | 18X2 | |
100425 | DD002 | S1 | AL-Exome-CV1-Apr22-Nimblegen | Zhang Lab | 80 | |
100425 | DD002 | S2 | JD-BSPP-Cmm09A-Oct4GFPiPs-Apr8-iPS | Zhang Lab | 80 | |
100425 | DD002 | S3 | JD-BSPP-Cmm09A-mousePGC-Apr8-PGC | Zhang Lab | 80 | |
100425 | DD002 | S4 | AL-Exome-CV1-Apr22-Nimbegen | Zhang Lab | 80 | |
100425 | DD002 | S5 | DD-BSPP-CpG97K-AG01972p18-Apr22-A1 | Zhang Lab | 80 | |
100425 | DD002 | S6 | DD-BSPP-CpG97K-AG114p8p13-Apr22-A2 | Zhang Lab | 80 | |
100425 | DD002 | S7 | DD-BSPP-CpG97K-H9-Apr22 | Zhang Lab | 80 | |
100425 | DD002 | S8 | DD-BSPP-CpG97K-BJp13-Apr22-BJ | Zhang Lab | 80 | |
100420 | HL051 | S1 | Zymo-M1-Apr16 | Zhang Lab | 40 | 457,916,000 |
100420 | HL051 | S2 | Zymo-M2-Apr16 | Zhang Lab | 40 | 436,172,000 |
100420 | HL051 | S3 | Zymo-M3-Apr16 | Zhang Lab | 40 | 354,544,000 |
100420 | HL051 | S4 | Zymo-M4-Apr16 | Zhang Lab | 40 | 212,326,000 |
100420 | HL051 | S5 | Zymo-H1-Apr16 | Zhang Lab | 40 | 558,978,000 |
100420 | HL051 | S6 | Zymo-H2-Apr16 | Zhang Lab | 40 | 520,089,000 |
HC-MDA_E.Coli_10h_5-Apr19 | ||||||
100420 | HL051 | S7 | HC-MDA_E.Coli_10h_6-Apr19 | Zhang Lab | 40 | 175,344,000 |
PhiX | ||||||
100420 | HL051 | S8 | HC-MDA_Mouse_2h_c4-Mar02 | Zhang Lab | 40 | 124,140,000 |
100415 | HL050 | S1 | AL-Exome-ips 11a-Eggan-Mar9 | Zhang Lab | 80 | 1,228,095,000 |
100415 | HL050 | S2 | AL-Exome-CV2- Apr12-Nimblegen | Zhang Lab | 80 | 1,949,162,000 |
100415 | HL050 | S3 | AL-Exome-CV2- Apr12-Nimblegen | Zhang Lab | 80 | 1,783,540,000 |
100415 | HL050 | S4 | AL-Exome-ips 11a-Eggan-Mar9 | Zhang Lab | 80 | 1,152,158,000 |
100415 | HL050 | S5 | AL-Exome-CV3-Apr12-Nimblegen | Zhang Lab | 80 | 1,617,660,000 |
100415 | HL050 | S6 | AL-Exome-CV3-Apr12-Nimblegen | Zhang Lab | 80 | 1,554,899,000 |
100415 | HL050 | S7 | Al-Exome-CV4-Apr12-Nimblegen | Zhang Lab | 80 | 1,975,782,000 |
100415 | HL050 | S8 | Al-Exome-CV4-Apr12-Nimblegen | Zhang Lab | 80 | 1,871,429,000 |
100411 | HL049_2 | S1 | AL-exome-ips 11b-Eggan-Mar9 | Zhang Lab | 80 | 710,636,000 |
100411 | HL049_2 | S2 | AL-Exome-PGP1F-Mar9-Agilent_Cell_Pellete | Zhang Lab | 80 | 1,873,431,000 |
100411 | HL049_2 | S3 | AL-Exome-PGP1F-Mar9-Agilent_Cell_Pellete | Zhang Lab | 80 | 1,631,006,000 |
100411 | HL049_2 | S4 | AL-exome-hFib 17-Eggan-Mar9 | Zhang Lab | 80 | 2,120,734,000 |
100411 | HL049_2 | S5 | AL-Exome-ips 11a-Eggan-Mar9 | Zhang Lab | 80 | 608,718,000 |
100411 | HL049_2 | S6 | AL-Exome-ips 11a-Eggan-Mar9 | Zhang Lab | 80 | 10,092,000 |
100411 | HL049_2 | S7 | AL-Exome-ips 29e-Eggan-Mar9 | Zhang Lab | 80 | 509,138,000 |
100411 | HL049_2 | S8 | AL-Exome-ips 29e-Eggan-Mar9 | Zhang Lab | 80 | 1,160,777,000 |
100407 | DD001 | S1 | HMS-GC-Exome-PGP3 | Zhang Lab | 60 | 633,169,000 |
100407 | DD001 | S2 | MCG-HS-EJ645-Feb26 | Zhang Lab | 60 | 1,214,095,000 |
100407 | DD001 | S3 | MCG-HS-EJ656-Feb26 | Zhang Lab | 60 | 321,550,000 |
100407 | DD001 | S4 | HMS-GC-Exome-PGP10 | Zhang Lab | 60 | 1,294,949,000 |
100407 | DD001 | S5 | DD-BSPP-CpG97K-05215A18-Mar18-B9 | Zhang Lab | 60 | 956,968,000 |
100407 | DD001 | S6 | DD-BSPP-CpG97K-05215B09-Mar18-B10 | Zhang Lab | 60 | 259,485,000 |
100407 | DD001 | S7 | DD-BSPP-CpG97K-09351B09-Mar18-B22 | Zhang Lab | 60 | 856,623,000 |
100407 | DD001 | S8 | DD-BSPP-CpG97K-13066B09-Mar18-B28 | Zhang Lab | 60 | 229,124,000 |
100401 | HL048 | S1 | AL-Exome-PGP1_iPS_P16-Mar23-Nimblegen | Zhang Lab | 80 | 2,175,052,000 |
100401 | HL048 | S2 | AL-Exome-PGP1_iPS_P16-Mar23-Nimblegen | Zhang Lab | 80 | 2,424,503,000 |
100401 | HL048 | S3 | AL-Exome-PGP1F-Mar23-Nimblegen | Zhang Lab | 80 | 1,872,156,000 |
100401 | HL048 | S4 | AL-Exome-PGP1F-Mar23-Nimblegen | Zhang Lab | 80 | 1,756,170,000 |
100401 | HL048 | S5 | AL-Exome-hFib29-Eggan-Mar9 | Zhang Lab | 80 | 2,288,271,000 |
100401 | HL048 | S6 | AL-Exome-hFib29-Eggan-Mar9 | Zhang Lab | 80 | 2,100,116,000 |
100401 | HL048 | S7 | AL-Exome-29A_Eggan-Mar17 | Zhang Lab | 80 | 2,132,208,000 |
100401 | HL048 | S8 | AL-Exome-29A_Eggan-Mar17 | Zhang Lab | 80 | 1,980,027,000 |
100326 | HL047 | S1 | AL-Exome-CViB-Mar23-Nimblegen | Zhang Lab | 80 | 2,064,171,000 |
100326 | HL047 | S2 | AL-Exome-CViB-Mar23-Nimblegen | Zhang Lab | 80 | 2,013,502,000 |
100326 | HL047 | S3 | HMS-GC-Exome-PGP9-Feb24 | Zhang Lab | 80 | 2,298,166,000 |
100326 | HL047 | S4 | HMS-GC-Exome-PGP2 | Zhang Lab | 80 | 2,627,795,000 |
100326 | HL047 | S5 | HMS-GC-Exome-PGP3 | Zhang Lab | 80 | 716,842,000 |
100326 | HL047 | S6 | HMS-GC-Exome-PGP3 | Zhang Lab | 80 | 722,736,000 |
100326 | HL047 | S7 | AL-Exome-CVF-Mar23-Nimblegen | Zhang Lab | 80 | 2,368,574,000 |
100326 | HL047 | S8 | AL-Exome-CVF-Mar23-Nimblegen | Zhang Lab | 80 | 2,290,573,000 |
100318 | HL046_3 | S1 | AL-exome-hFib 17-Eggan-Mar9 | Zhang Lab | 80 | 272,118,000 |
100318 | HL046_3 | S2 | AL-exome-hFib 11-Eggan-Mar9 | Zhang Lab | 80 | 3,874,000 |
100318 | HL046_3 | S3 | AL-exome-ips 11b-Eggan-Mar9 | Zhang Lab | 80 | 62,172,000 |
100318 | HL046_3 | S4 | AL-exome-ips 17a-Eggan-Mar9 | Zhang Lab | 80 | 1,530,000 |
100318 | HL046_3 | S5 | AL-exome-ips 17b-Eggan-Mar9 | Zhang Lab | 80 | 1,418,802,000 |
100318 | HL046_3 | S6 | AL-Exome-CViB-Feb21-Agilent | Zhang Lab | 80 | 19,536,000 |
100318 | HL046_3 | S7 | AL-Exome-CViB-Feb21-Agilent | Zhang Lab | 80 | 70,512,000 |
100318 | HL046_3 | S8 | MCG-HS-EJ657-Feb26 | Zhang Lab | 80 | 1,633,297,000 |
100312 | HL045 | S1 | AL-exome-hFib 17-Eggan-Mar9 | Zhang Lab | 80 | 1,506,856,000 |
100312 | HL045 | S2 | HMS-GC-Exome-PGP2 | Zhang Lab | 80 | 2,253,160,000 |
100312 | HL045 | S3 | HMS-GC-Exome-PGP7-Feb24 | Zhang Lab | 80 | 2,238,526,000 |
100312 | HL045 | S4 | HMS-GC-Exome-PGP9-Feb24 | Zhang Lab | 80 | 2,184,078,000 |
100312 | HL045 | S5 | AL-exome-hFib 11-Eggan-Mar9 | Zhang Lab | 80 | 1,494,615,000 |
100312 | HL045 | S6 | AL-exome-ips 11b-Eggan-Mar9 | Zhang Lab | 80 | 1,517,718,000 |
100312 | HL045 | S7 | AL-exome-ips 17a-Eggan-Mar9 | Zhang Lab | 80 | 1,898,132,000 |
100312 | HL045 | S8 | AL-exome-ips 17b-Eggan-Mar9 | Zhang Lab | 80 | 1,484,276,000 |
100309 | HL044 | S1 | JD-CPG97K-BC_11306A18-Feb25-B25 | Zhang Lab | 60 | 1,195,725,000 |
100309 | HL044 | S2 | JD-CPG97K-BC_11306B09-Feb25-B26 | Zhang Lab | 60 | 1,010,595,000 |
100309 | HL044 | S3 | JD-CPG97K-BC_13066A17-Feb25-B27 | Zhang Lab | 60 | 1,282,911,000 |
100309 | HL044 | S4 | AL-Genome-FS_gDNA-Feb8 | Zhang Lab | 60 | 299,586,000 |
100309 | HL044 | S5 | JD-CPG97K+30K-BC_01373A17-Jan15-B3 | Zhang Lab | 60 | 572,821,000 |
100309 | HL044 | S6 | AL-Exome-CViB-Feb21-Agilent | Zhang Lab | 60 | 43,405,000 |
100309 | HL044 | S7 | AL-DigiQ-CVF_PhiX-Mar3-(Jan29) | Zhang Lab | 60 | 1,123,888,000 |
100309 | HL044 | S8 | KZ-DigiQ-FS_6N_PhiX-Mar3-(Jan27) | Zhang Lab | 60 | 490,072,000 |
100305 | HL043 | S1 | AL-Genome-FS_gDNA-Feb8 | Zhang Lab | 60 | 713,975,000 |
100305 | HL043 | S2 | AL-Genome-FS_gDNA-Feb8 | Zhang Lab | 60 | 580,915,000 |
100305 | HL043 | S3 | AL-DigiQ-CVF_Feb-Mar3 w/ PhiX | Zhang Lab | 60 | 1,226,356,000 |
100305 | HL043 | S4 | JD-CPG97K-BC_09351A17-Feb25 -B21 | Zhang Lab | 60 | 1,070,585,000 |
100305 | HL043 | S5 | JD-CPG97K-BC_09491A17-Feb25-B23 | Zhang Lab | 60 | 1,089,308,000 |
100305 | HL043 | S6 | JD-CPG97K-BC_09491B09-Feb25-B24 | Zhang Lab | 60 | 1,072,970,000 |
100305 | HL043 | S7 | AL-Genome-DF_gDNA-Feb8 | Zhang Lab | 60 | 1,636,622,000 |
100305 | HL043 | S8 | AL-Genome-DF_gDNA-Feb8 | Zhang Lab | 60 | 1,558,396,000 |
AL-DigiQ-CViB/iF-Jan29 | ||||||
100302 | HL042 | S1 | KZ-DigiQ-FS_300BP-Jan27 | Zhang Lab | 60 | 727,876,000 |
PhiX | ||||||
100302 | HL042 | S2 | MCG-HS-EJ644-Feb26 | Zhang Lab | 60 | 534,189,000 |
100302 | HL042 | S3 | AL-Exome-CViB-Feb21-Agilent | Zhang Lab | 60 | 535,218,000 |
100302 | HL042 | S4 | JD-cpg97k-Breastcancer_09092B09-Feb25-B16 | Zhang Lab | 60 | 688,224,000 |
100302 | HL042 | S5 | JD-cpg97k-Breastcancer_09123A17-Feb25-B17 | Zhang Lab | 60 | 988,402,000 |
100302 | HL042 | S6 | JD-cpg97k-Breastcancer_09123B09-Feb25-B18 | Zhang Lab | 60 | 1,305,870,000 |
100302 | HL042 | S7 | JD-cpg97k-Breastcancer_09206B09-Feb25-B19 | Zhang Lab | 60 | 1,139,776,000 |
100302 | HL042 | S8 | JD-cpg97k-Breastcancer_09265B09-Feb25-B20 | Zhang Lab | 60 | 1,194,327,000 |
100226 | HL041 | S1 | JD-CPG97K-BreastCancer-05359A17_R-Feb17-B11R | Zhang Lab | 60 | 1,493,888,000 |
AL-DigiQ-CViB/iF-Jan29 | ||||||
100226 | HL041 | S2 | KZ-DigiQ-FS_300BP-Jan27 | Zhang Lab | 60 | 403,356,000 |
PhiX | ||||||
100226 | HL041 | S3 | HMS-GC-Exome-PGP7-Feb24 | Zhang Lab | 60 | 1,646,149,000 |
100226 | HL041 | S4 | HMS-GC-Exome-PGP9-Feb24 | Zhang Lab | 60 | 1,439,205,000 |
100226 | HL041 | S5 | JD-CPG97K-BreastCancer-05359B09_R-Feb17-B12R | Zhang Lab | 60 | 1,453,021,000 |
100226 | HL041 | S6 | JD-CPG97K-BreastCancer_07292A17_R-Feb17-B13R | Zhang Lab | 60 | 1,678,189,000 |
100226 | HL041 | S7 | JD-CPG97K-BreastCancer_07292B09_R-Feb17-B14R | Zhang Lab | 60 | 1,463,761,000 |
AL-DigiQ-CVF-Jan29 | ||||||
100226 | HL041 | S8 | KZ-DigiQ-FS_6N-Jan27 | Zhang Lab | 60 | 1,575,744,000 |
PhiX | ||||||
100219 | HL040 | S1 | UCSD-BO-YC_RNA-Feb17 | Zhang Lab | 60 | 1,357,018,000 |
AL-DigiQ-CViB/iF-Jan29 | ||||||
100219 | HL040 | S2 | KZ-DigiQ-FS_300BP-Jan27 | Zhang Lab | 60 | 980,963,000 |
PhiX | ||||||
100219 | HL040 | S3 | JD-CPG97k+30k-Breast_cancer_01373A17-Jan15-B3 | Zhang Lab | 60 | 86,039,000 |
100219 | HL040 | S4 | JD-CPG97k+30k-Breast_cancer_01373B09-Jan15-B4 | Zhang Lab | 60 | 870,182,000 |
100219 | HL040 | S5 | JD-CPG97K-BreastCancer-09075B09-Feb17-15E | Zhang Lab | 60 | 757,280,000 |
100219 | HL040 | S6 | JD-CPG97K-BreastCancer-09075B09-Feb17-15R | Zhang Lab | 60 | 1,046,148,000 |
100219 | HL040 | S7 | AL-DigiQ-CVF-Feb17 w/ PhiX | Zhang Lab | 60 | 993,905,000 |
AL-DigiQ-CVF-Jan29 | ||||||
100219 | HL040 | S8 | KZ-DigiQ-FS_6N-Jan27 | Zhang Lab | 60 | 0 |
PhiX | ||||||
100212 | HL039 | S1 | JD-CPGmm9A-CtmESC-Feb10 | Zhang Lab | 60 | 736,934,000 |
AL-DigiQ-CViB/iF-Jan29 | ||||||
100212 | HL039 | S2 | KZ-DigiQ-FS_300BP-Jan27 | Zhang Lab | 60 | 0 |
PhiX | ||||||
100212 | HL039 | S3 | HMS-GC-exome-Nim-GT | Zhang Lab | 60 | 833,000 |
100212 | HL039 | S4 | HMS-GC-Exome-PGP4 | Zhang Lab | 60 | 734,357,000 |
100212 | HL039 | S5 | JD-CPG97K-Breastcancer_03170B09-Jan28-B7 | Zhang Lab | 60 | 1,238,744,000 |
100212 | HL039 | S6 | JD-CPG97K-Breast_Cancer_03259B09-Jan28-B8 | Zhang Lab | 60 | 1,103,439,000 |
100212 | HL039 | S7 | AL-Exome-CViB-AB_Jan28 | Zhang Lab | 60 | 0 |
100212 | HL039 | S8 | JD-CPGmm9A-TETmESC-Feb10 | Zhang Lab | 60 | 1,348,896,000 |
Date | Probe Set | Tube Label | Conc. X vol | Seq facility | Lib. Const. | Read Length | # filtered reads | # mappable reads | |
Feb 7 | HL038 | Exome | s1,AL-Exome-CViB-AB-Jan28 | - | Zhang Lab | Alice | 60bp | 2,631,195 | |
Feb 7 | HL038 | BSPP | s2,JD-cpg97k-Breastcancer_sample_01373B09-Jan28 | - | Zhang Lab | Jie | 60bp | 28,592,257 | 73% |
Feb 7 | HL038 | BSPP | s3,JD-cpg97k-Breastcancer_sample_01436B09_Jan28 | - | Zhang Lab | Jie | 60bp | 28,611,301 | 72% |
Feb 7 | HL038 | Exome | s4,KZ-Exome-CViB-N2-Jan28 | - | Zhang Lab | Kun | 60bp | 22,996,517 | |
Feb 7 | HL038 | BSPP | s5,JD-cpg97k-Harvard_sample_M0013.1-Jan28 | - | Zhang Lab | Jie | 60bp | 27,703,912 | |
Feb 7 | HL038 | BSPP | s6,JD-cpg97k-Harvard_sample_M0077.3-Jan28 | - | Zhang Lab | Jie | 60bp | 28,515,530 | |
Feb 7 | HL038 | BSPP | s7,JD-cpg97k-Harvard_sample_M0124.3-Jan28 | - | Zhang Lab | Jie | 60bp | 27,796,744 | |
Feb 7 | HL038 | BSPP | s8,JD-cpg97k-Harvard_sample_M0188.3-Jan28 | - | Zhang Lab | Jie | 60bp | 26,285,658 | |
Feb 2 | HL037 | BSPP | s1,JD-B3 | - | Zhang Lab | Alice | 60bp | 329192 | |
Feb 2 | HL037 | DigiQ | s2,AL-DigiQ-CVF-Jan29/KZ-DigiQ-FS_6N-Jan27 | - | Zhang Lab | Jie | 60bp | 396995 | |
Feb 2 | HL037 | Exome | s3,AL-Exome-DF-Jan26-Nimblegen | - | Zhang Lab | Alice | 60bp | 24111229 | 86% |
Feb 2 | HL037 | BSPP | s4,KZ-BSPP-B2-N2-Jan28 | - | Zhang Lab | Kun | 60bp | 24816617 | 22%/60%(hg18) |
Feb 2 | HL037 | Exome | s5,AL-Exome-CViB-AB-Jan28 | - | Zhang Lab | Alice | 60bp | 2627559 | 86% |
Feb 2 | HL037 | Exome | s6,AL-Exome-CViB-CDE-Jan28 | - | Zhang Lab | Alice | 60bp | 26225044 | 78% |
Feb 2 | HL037 | DigiQ | s7, AL-DigiQ-CViB-iF-Jan29/KZ-DigiQ-FS_300P-Jan27 | - | Zhang Lab | Alice | 60bp | 461181 | |
Feb 2 | HL037 | Exome | s8,AL-Exome-FS-Jan26-Nimblegen | - | Zhang Lab | Alice | 60bp | 20920646 | 90% |
Jan 27 | HL036 | Exome | s1,AL-Exome-DF-Jan26-Nimblegen | - | Zhang Lab | Alice | 60bp | 29,983,562 | 86.81% |
Jan 27 | HL036 | DigiQ | s2,AL-DigiQ-CViB/iF-Jan26 | - | Zhang Lab | Alice | 60bp | 884920 | |
Jan 27 | HL036 | BSPP | s3,JD-CPG97K-Harvard_Sample_B0134.1-Jan22 | - | Zhang Lab | Jie | 60bp | 17,618,873 | 26%/68%(hg18) |
Jan 27 | HL036 | Exome | s4,AL-Exome-FS-Jan26-Nimblegen | - | Zhang Lab | Alice | 60bp | 30,430,624 | 89.97% |
Jan 27 | HL036 | BSPP | s5,JD-CPG97K-Harvard_Sample_B0107.1-Jan22 | - | Zhang Lab | Jie | 60bp | 13,332,549 | 34%/70%(hg18) |
Jan 27 | HL036 | BSPP | s6,JD-CPG97K-Harvard_Sample_B0108.1-Jan22 | - | Zhang Lab | Jie | 60bp | 15,408,196 | 36%/72%(hg18) |
Jan 27 | HL036 | DigiQ | s7, AL-DigiQ-CVF-Jan26 | - | Zhang Lab | Alice | 60bp | failed | |
Jan 27 | HL036 | BSPP | s8,JD-CPG97k+30k-Breast_Cancer_01192B09-Jan15 | - | Zhang Lab | Jie | 60bp | 17,643,295 | 14.5%/62%(hg18) |
Jan 23 | HL035 | Exome | s2,HMS-GC-Exome-PGP2 | - | Zhang Lab | Alice | 60bp | 28,245,781 | |
Jan 23 | HL035 | Exome | s3,HMS-GC-Exome-PGP3 | - | Zhang Lab | Alice | 60bp | 27,995,793 | |
Jan 23 | HL035 | Exome | s4,HMS-GC-Exome-PGP3 | - | Zhang Lab | Alice | 60bp | 23,101,612 | |
Jan 23 | HL035 | BSPP | s5,JD-CPG97K-HarvardB0047.1-Jan22 | - | Zhang Lab | Jie | 60bp | 10,279,091 | 17% |
Jan 23 | HL035 | BSPP | s6,JD-CPG97K+30K-HarvardB0060.1-Jan22 | - | Zhang Lab | Jie | 60bp | 12,433,511 | 31% |
Jan 23 | HL035 | BSPP | s7,JD-CPG97K-HarvardB0070.1-Jan22 | - | Zhang Lab | Jie | 60bp | 14,238,777 | 36% |
Jan 23 | HL035 | Exome | s8,AL-Exome-PGP7-Jan18 | - | Zhang Lab | Alice | 60bp | 7,225,106 | |
Jan 13 | HL034 | Exome | s1,HMS-GC-Exome-PGP5-Oct09 | - | Zhang Lab | Billy/Luhan | 60bp | 15,630,851 | |
Jan 13 | HL034 | DigiQ | s2,HMS-GC-Exome-PGP5-Oct09 | - | Zhang Lab | Billy/Luhan | 60bp | 16,208,687 | |
Jan 13 | HL034 | Exome | s3,AL-Exome-CViB-Jan14-AB | - | Zhang Lab | Alice | 60bp | 15,754,533 | |
Jan 13 | HL034 | Ctrl | s4,AL-Exome-CViB-Jan14-AB | - | Zhang Lab | Alice | 60bp | 15,864,921 | |
Jan 13 | HL034 | Exome | s5,AL-Exome-CViB-Jan14-CDE | - | Zhang Lab | Alice | 60bp | 15,761,086 | |
Jan 13 | HL034 | Exome | s6,AL-Exome-CViB-Jan14-CDE | - | Zhang Lab | Alice | 60bp | 15,795,450 | |
Jan 13 | HL034 | BSPP | s7,JD-cpg97k+30k-BC-01230B09-Jan15 | - | Zhang Lab | Jie | 60bp | 12,246,857 | 26% |
Jan 13 | HL034 | Exome | s8,HMS-GC-exome-Nim-GT | - | Zhang Lab | Billy/Luhan | 60bp | 7,671,888 | |
Jan 13 | HL033 | Exome | s1,HMS-GC-exome-Nim-GT | - | Zhang Lab | Billy/Luhan | 60bp | 9,619,807 | |
Jan 13 | HL033 | DigiQ | s2,KZ-DigiQ-DF-Jan11/AL-DigiQ-CVF-Jan12 | - | Zhang Lab | Alice/Kun | 60bp | 5,020,038 | |
Jan 13 | HL033 | BisExSeq | s3,HL-BisExon-NA20431 | - | Zhang Lab | Alan | 60bp | 11,363,087 | 75% |
Jan 13 | HL033 | Ctrl | s4,PhiX | - | Zhang Lab | Illumina | 60bp | 4,589,847 | |
Jan 13 | HL033 | Exome | s5,AL-Exome-CViB-Jan12-AB | - | Zhang Lab | Alice | 60bp | 1,647,688(overloaded) | |
Jan 13 | HL033 | Exome | s6,AL-Exome-CViB-Jan12-CDE | - | Zhang Lab | Alice | 60bp | 13,489(overloaded) | |
Jan 13 | HL033 | DigiQ | s7, KZ-DigiQ-FS-Jan11/AL-DigiQ-CViB-Jan12 | - | Zhang Lab | Alice/Kun | 60bp | 5,903,015 | |
Jan 13 | HL033 | Exome | s8, AL-Exome-CViB-Jan12-AB | - | Zhang Lab | Kun | 60bp | 978,032(overloaded) | |
Jan 05 | HL032 | DigiQ | s1,AL-DigiQ-CVF-Dec23 | - | Zhang Lab | Alice | 60bp | 14,950,591 | |
Jan 05 | HL032 | DigiQ | s2,AL-DigiQ-CViB-Dec23 | - | Zhang Lab | Alice | 60bp | 14,520,807 | |
Jan 05 | HL032 | DigiQ | s3,KZ-DigiQ-DF-Jan04 | - | Zhang Lab | Kun | 60bp | 10,753,395 | |
Jan 05 | HL032 | Ctrl | s4,PhiX | - | Zhang Lab | Illumina | 60bp | 25,057(bad DNA) | |
Jan 05 | HL032 | RRS | s5,KZ-RRS-CVF1-Nov27 | - | Zhang Lab | Kun | 60bp | 8,295,917 | |
Jan 05 | HL032 | RRS | s6,KZ-RRS-CViF1-Nov27 | - | Zhang Lab | Kun | 60bp | 8,810,014 | |
Jan 05 | HL032 | DigiQ | s7, KZ-DigiQ-FS-Jan04 | - | Zhang Lab | Kun | 60bp | 10,177,605 | |
Jan 05 | HL032 | Exome | s8,HMS-GC-PGP8A-Nov1 | - | Zhang Lab | Billy/Luhan | 60bp | 13,216,056 |
2009
Jul-Dec
Month | Date | Probe Set | Tube label | Conc. x vol. | Seq facility | Lib. Const. | Read length | # filtered reads | # mappable reads | |
Dec 29 | HL030 | Exome | s1,PGP9 | - | Zhang Lab | Billy/Luhan | 60bp | 14,705,217 | ||
Dec 29 | HL030 | Exome | s2,PGP9 | - | Zhang Lab | Billy/Luhan | 60bp | 14,950,591 | ||
Dec 29 | HL030 | Exome | s3,PGP9 | - | Zhang Lab | Billy/Luhan | 60bp | 14,832,179 | ||
Dec 29 | HL030 | Exome | s4,NA12878 | - | Zhang Lab | Billy/Luhan | 60bp | 15,414,631 | ||
Dec 29 | HL030 | Exome | s5,NA12878 | - | Zhang Lab | Billy/Luhan | 60bp | 15,536,069 | ||
Dec 29 | HL030 | Exome | s6,NA12878 | - | Zhang Lab | Billy/Luhan | 60bp | 15,767,169 | ||
Dec 29 | HL030 | Hap | s7, HC-MDA-hCell-Dec17-sam006 | - | Zhang Lab | Sam(12/17/09) | 60bp | 15,094,541 | ||
Dec 29 | HL030 | ? | s8,TM | - | Zhang Lab | Palsson | 60bp | 2,384(Failed) | ||
Dec 26 | AL008 | Hap | s1, HC-MDA-hCell-Dec17-sam003 | - | Zhang Lab | Sam(12/17/09) | 60bp | 15,826,724 | ||
Dec 26 | AL008 | Hap | s2, HC-MDA-hCell-Dec17-sam004 | - | Zhang Lab | Sam(12/17/09) | 60bp | 7,814,019 | ||
Dec 26 | AL008 | Hap | s3, HC-MDA-hCell-Dec17-sam005 | - | Zhang Lab | Sam(12/17/09) | 60bp | 4,516,674 | ||
Dec 26 | AL008 | DigiQuant | s4,PCR-CV-iB(w/PhiX) | - | Zhang Lab | Alice | 60bp | 5,625,091 | ||
Dec 26 | AL008 | BSPP | s5,B2-175bp | - | Zhang Lab | Ida | 60bp | 2,629,431 | 22% | |
Dec 26 | AL008 | BSPP | s6,B2-200bp | - | Zhang Lab | Ida | 60bp | 3,834,872 | 21% | |
Dec 26 | AL008 | BSPP | s7,H2-175bp | - | Zhang Lab | Ida | 60bp | 8,081,341 | 26% | |
Dec 26 | AL008 | BSPP | s8,H2-200bp | - | Zhang Lab | Ida | 60bp | 10,992,765 | 30% | |
Dec 22 | AL007 | DigiQuant | s2,PCR-CV-hiPS-F | - | Zhang Lab | Alice | 60bp | 0(overloaded) | ||
Dec 22 | AL007 | Exome | s3,CV-iB-ACE | - | Zhang Lab | Kun | 60bp | 1,235,398 | ||
Dec 22 | AL007 | Exome | s4,CV-iB-BD | - | Zhang Lab | Kun | 60bp | 642,138 | ||
Dec 22 | AL007 | BSPP | s5,Har1 | - | Zhang Lab | Ida | 60bp | 6,610,330 | 12% | |
Dec 22 | AL007 | BSPP | s6,Har2 | - | Zhang Lab | Ida | 60bp | 5,347,364 | 20% | |
Dec 22 | AL007 | BSPP | s7,Har3 | - | Zhang Lab | Ida | 60bp | 15,243,209 | 26% | |
Dec 22 | AL007 | BSPP | s8,Har4 | - | Zhang Lab | Ida | 60bp | 14,904,014 | 24% | |
Dec 18 | AL006 | DigiQuant | s2,PCR-CV-hiPS-F(w/phiX) | - | Zhang Lab | Alice | 60bp | 18,527,480 | ||
Dec 18 | AL006 | RRS | s3,DpnII-CV-Fibroblast1 | - | Zhang Lab | Kun | 60bp | 9,278,480 | ||
Dec 18 | AL006 | RRS | s4,DpnII-CV-hiPS-F | - | Zhang Lab | Kun | 60bp | 7,530,675 | ||
Dec 18 | AL006 | Exome | s5,PGP8C | - | Zhang Lab | Billy/Luhan | 60bp | 11,320,511 | ||
Dec 18 | AL006 | Exome | s6,PGP9 | - | Zhang Lab | Billy/Luhan | 60bp | 7,466,479 | ||
Dec 18 | AL006 | BSPP | s7,Har9 | - | Zhang Lab | Jie | 60bp | 16,529,111 | 28% | |
Dec 18 | AL006 | BSPP | s8,Har10 | - | Zhang Lab | Jie | 60bp | 15,507,608 | 11% | |
Dec 09 | HL029 | Exome | s1,PGP4, #8-9 | - | Zhang Lab | Billy/Luhan | 60bp | 11,299,862 | ||
Dec 09 | HL029 | Exome | s2,PGP6, #8-9 | - | Zhang Lab | Billy/Luhan | 60bp | 10,572,824 | ||
Dec 09 | HL029 | Exome | s3,PGP9 | - | Zhang Lab | Billy/Luhan | 60bp | 9,577,578 | ||
Dec 09 | HL029 | Exome | s4,PGP10,#8-9 | - | Zhang Lab | Billy/Luhan | 60bp | 13,012,173 | ||
Dec 09 | HL029 | Exome | s5,CV-hiPS-B | - | Zhang Lab | Alan | 60bp | 16,316,464 | ||
Dec 09 | HL029 | Exome | s6,CV-hiPS-B | - | Zhang Lab | Alan | 60bp | 17,365,795 | ||
Dec 09 | HL029 | Exome | s7,CV-hiPS-B | - | Zhang Lab | Alan | 60bp | 16,012,994 | ||
Dec 09 | HL029 | Exome | s8,CV-hiPS-B | - | Zhang Lab | Alan | 60bp | 1,602,572 | ||
Dec 06 | HL028 | RRS | s1,Dpn-CV-F2 | - | Zhang Lab | Kun | 60bp | 7,073,505 | ||
Dec 06 | HL028 | RRS | s2,Dpn-CV-F2 | - | Zhang Lab | Kun | 60bp | 7,060,114 | ||
Dec 06 | HL028 | RRS | s3,Dpn-CV-iF2 | - | Zhang Lab | Kun | 60bp | 6,001,805 | ||
Dec 06 | HL028 | RRS | s4,Dpn-CV-iF2 | - | Zhang Lab | Kun | 60bp | 3,264,795 | ||
Dec 06 | HL028 | Exome | s5,CV-iB (A,C) | - | Zhang Lab | Billy/Luhan | 60bp | 7,511,894 | ||
Dec 06 | HL028 | Exome | s6,PGP8D | - | Zhang Lab | Billy/Luhan | 60bp | 9,310,623 | ||
Dec 06 | HL028 | Exome | s7,PGP8E | - | Zhang Lab | Billy/Luhan | 60bp | 11,224,269 | ||
Dec 06 | HL028 | Exome | s8,PGP8 | - | Zhang Lab | Billy/Luhan | 60bp | 5,999,123 | ||
Dec 02 | HL027 | RRS | s1,Dpn-CV-iB1 | - | Zhang Lab | Kun | 60bp | 10,747,192 | ||
Dec 02 | HL027 | RRS | s2,Dpn-CV-iF1 | - | Zhang Lab | Kun | 60bp | 9,030,411 | ||
Dec 02 | HL027 | RRS | s3,Dpn-CV-F1 | - | Zhang Lab | Kun | 60bp | 9,935,148 | ||
Dec 02 | HL027 | RRS | s4,CV-iB (A,C) | - | Zhang Lab | Alan | 60bp | 13,456,232 | ||
Dec 02 | HL027 | Exome | s5,CV-iB (A,C) | - | Zhang Lab | Alan | 60bp | 13,137,026 | ||
Dec 02 | HL027 | Exome | s6,CV-iB (B,D,E) | - | Zhang Lab | Alan | 60bp | 16,102,120 | ||
Dec 02 | HL027 | Exome | s7,CV-iB (B,D,E) | - | Zhang Lab | Alan | 60bp | 15,933,168 | ||
Dec 02 | HL027 | Exome | s8,PGP8a | - | Zhang Lab | Billy/Luhan | 60bp | 11,956,198 | ||
Nov 27 | HL026 | Exome | s1,CV-fibroblast (Alice) | - | Zhang Lab | Alan | 60bp | 17,121,798 | ||
Nov 27 | HL026 | Exome | s2,CVF-N(Covaris) | - | Zhang Lab | Alan | 60bp | 12,577,956 | ||
Nov 27 | HL026 | Exome | s3,CVF-N(Covaris) | - | Zhang Lab | Alan | 60bp | 11,767,869 | ||
Nov 27 | HL026 | Exome | s4,CVF-N(Covaris) | - | Zhang Lab | Alan | 60bp | 12,212,818 | ||
Nov 27 | HL026 | Exome | s5,CV-iPS (#1-7) | - | Zhang Lab | Alan | 60bp | 18,413,190 | ||
Nov 27 | HL026 | Exome | s6,DF6(#1-7) | - | Zhang Lab | Alan | 60bp | 18,035,161 | ||
Nov 27 | HL026 | Exome | s7,Foreskin(#1-7) | - | Zhang Lab | Alan | 60bp | 17,939,296 | ||
Nov 27 | HL026 | Exome | s8,CVF-N(USER/S1, A/B) | - | Zhang Lab | Alan | 60bp | 9,364,209 | ||
Nov 27 | HL025 | Exome | s1,PGP3 #8-9 | - | Zhang Lab | Alan | 60bp | 9,106,173 | ||
Nov 27 | HL025 | Exome | s2,PGP5 #8-9 | - | Zhang Lab | Alan | 60bp | 10,174,527 | ||
Nov 23 | HL025 | Exome | s3,PGP7 #8-9 | - | Zhang Lab | Alan | 60bp | 16,653,644 | ||
Nov 23 | HL025 | Exome | s4,CpgSeq Harvard #2 | - | Zhang Lab | Jie | 60bp | failed | ||
Nov 23 | HL025 | Exome | s5,CpgSeq Harvard #5 | - | Zhang Lab | Jie | 60bp | 12914061 | ||
Nov 23 | HL025 | Exome | s6,CV-fibroblast #1-7 (Alice) | - | Zhang Lab | Alan | 60bp | 17,745,112 | ||
Nov 23 | HL025 | Exome | s7,CV-iPS #1-7 (Alice) | - | Zhang Lab | Alan | 60bp | 18,466,358 | ||
Nov 23 | HL025 | Exome | s8,CV-fibroblast New (#6-7) | - | Zhang Lab | Alan | 60bp | 10,392,332 | ||
Nov 19 | HL024 | Exome | s1,PGP1L, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 16,060,639 | ||
Nov 19 | HL024 | Exome | s2,PGP1L, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 16,406,685 | ||
Nov 19 | HL024 | Exome | s3,PGP1L, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 13,861,016 | ||
Nov 19 | HL024 | Exome | s4,PGP1L, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 12,455,546 | ||
Nov 19 | HL024 | Hap | s5,N12 | - | Zhang Lab | Sam | 60bp | 11,320,511 | ||
Nov 19 | HL024 | Exome | s6,PGP8B | - | Zhang Lab | Billy/Luhan | 60bp | 7,466,479 | ||
Nov 19 | HL024 | BCM | s7,P1 (Baylor) | - | Zhang Lab | Baylor | 60bp | 4,934,597 | ||
Nov 19 | HL024 | BCM | s8,P4 (Baylor) | - | Zhang Lab | Baylor | 60bp | 1,602,572 | ||
Nov 13 | HL023 | Exome | s1,PGP1-iPS, set 1-7 | - | Zhang Lab | Alan(11/05) | 60bp | 12,404,414 | ||
Nov 13 | HL023 | Exome | s2,PGP1-iPS, set 1-7 | - | Zhang Lab | Alan(11/05) | 60bp | 13,314,169 | ||
Nov 13 | HL023 | Exome | s3,PGP1-iPS, set 8 | - | Zhang Lab | Alan(11/05) | 60bp | 16,787,057 | ||
Nov 13 | HL023 | Exome | s4,PGP1-iPS, set 9 | - | Zhang Lab | Alan(11/05) | 60bp | 15,362,879 | ||
Nov 13 | HL023 | Exome | s5,DF6-9-9, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 16,614,857 | ||
Nov 13 | HL023 | Exome | s6,DF6-9-9, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 16,897,414 | ||
Nov 13 | HL023 | Exome | s7,Foreskin, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 16,023,565 | ||
Nov 13 | HL023 | Exome | s8,Foreskin, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 10,656,758 | ||
Nov 09 | HL022 | Exome | s1,DF6-9-9, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 12,652,000 | ||
Nov 09 | HL022 | Exome | s2,DF6-9-9, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 11,579,830 | ||
Nov 09 | HL022 | Exome | s3,Foreskin, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 9,624,602 | ||
Nov 09 | HL022 | Exome | s4,Foreskin, set 1-7 | - | Zhang Lab | Alice(10/28) | 60bp | 8,249,755 | ||
Nov 09 | HL022 | Exome | s5,CV-iPS (new), set 1-7 | - | Zhang Lab | Alan(11/05) | 60bp | 10,237,538 | ||
Nov 09 | HL022 | Exome | s6,CV-iPS (new), set 1-7 | - | Zhang Lab | Alan(11/05) | 60bp | 10,621,342 | ||
Nov 09 | HL022 | Exome | s7,CV-iPS (new), set 1-7 | - | Zhang Lab | Alan(11/05) | 60bp | 14,439,349 | ||
Nov 09 | HL022 | Exome | s8, ChrWGA-N10 | - | Zhang Lab | Sam | 60bp | 8,624,207 | ||
Oct 29 | HL020 | Exome | s1,CV-iPS, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 15,416,990 | ||
Oct 29 | HL020 | Exome | s2,CV-iPS, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 17,569,551 | ||
Oct 29 | HL020 | Exome | s3,CV-fibroblast, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 16,895,701 | ||
Oct 29 | HL020 | Exome | s4,CV-fibroblast, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 15,502,227 | ||
Oct 29 | HL020 | Exome | s5,NA12878, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 16,231,983 | ||
Oct 29 | HL020 | Exome | s6,NA12878, set 8 | - | Zhang Lab | Alice(10/28) | 60bp | 17,231,313 | ||
Oct 29 | HL020 | Exome | s7,NA12878, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 16,903,121 | ||
Oct 29 | HL020 | Exome | s8,NA12878, set 9 | - | Zhang Lab | Alice(10/28) | 60bp | 13,743,218 | ||
Oct 26 | HL019 | CTM | s1,PGP1L-CTM1(HpaII) | - | Zhang Lab | Zymo | 40bp | |||
Oct 26 | HL019 | CTM | s2,PGP1L-CTM2(MspI) | - | Zhang Lab | Zymo | 40bp | |||
Oct 26 | HL019 | CTM | s3,PGP1L-CTM3(4-RE) | - | Zhang Lab | Zymo | 40bp | |||
Oct 26 | HL019 | Exome | s4,PGP4 | - | Zhang Lab | Billy | 40bp | |||
Oct 26 | HL019 | Exome | s5,PGP4 | - | Zhang Lab | Billy | 40bp | |||
Oct 26 | HL019 | Exome | s6,PGP6 | - | Zhang Lab | Billy | 40bp | |||
Oct 26 | HL019 | Exome | s7,PGP6 | - | Zhang Lab | Billy | 40bp | |||
Oct 26 | HL019 | Exome | s8,PGP10 | - | Zhang Lab | Billy | 40bp | |||
Oct 23 | HL018 | Exome | s1,PGP1-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 14,503,245 | ||
Oct 23 | HL018 | Exome | s2,PGP1-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 14,834,731 | ||
Oct 23 | HL018 | Exome | s3,NA12878_EL_140.2 | - | Zhang Lab | Kun | 40bp | 16,130,004 | ||
Oct 23 | HL018 | Exome | s4,NA12878_EL_140.2 | - | Zhang Lab | Kun | 40bp | 16,868,359 | ||
Oct 23 | HL018 | Exome | s5,NA12878_EL_140.2 | - | Zhang Lab | Kun | 40bp | 18,464,088 | ||
Oct 23 | HL018 | Exome | s6,NA12878_EL_140.2 | - | Zhang Lab | Kun | 40bp | 18,744,329 | ||
Oct 23 | HL018 | Exome | s7,CV-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 17,369,523 | ||
Oct 23 | HL018 | Exome | s8,CV-Fibroblast | - | Zhang Lab | Alice(10/09) | 40bp | 15,991,415 | ||
Oct 20 | HL017 | Exome | s1,PGP1-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 16,124,303 | ||
Oct 20 | HL017 | Exome | s2,DF6-9-9 | - | Zhang Lab | Alice(10/09) | 40bp | 18,701,054 | ||
Oct 20 | HL017 | Exome | s3,Foreskin | - | Zhang Lab | Alice(10/09) | 40bp | 17,660,876 | ||
Oct 20 | HL017 | Exome | s4,CV-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 17,798,921 | ||
Oct 20 | HL017 | Exome | s5,CV-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 18,054,888 | ||
Oct 20 | HL017 | Exome | s6,CV-fibroblast | - | Zhang Lab | Alice(10/09) | 40bp | 18,120,291 | ||
Oct 20 | HL017 | Exome | s7,NA12878_EL_140.2 | - | Zhang Lab | Kun | 40bp | 17,106,926 | ||
Oct 20 | HL017 | Exome | s8,NA12878_EL_140.3 | - | Zhang Lab | Kun | 40bp | 17,261,477 | ||
Oct 18 | HL016 | Exome | s1,CV-fibroblast | - | Zhang Lab | Alice(10/09) | 40bp | 15,670,145 | ||
Oct 18 | HL016 | Exome | s2,CV-fibroblast | - | Zhang Lab | Alice(10/09) | 40bp | 15,907,544 | ||
Oct 18 | HL016 | Exome | s3,CV-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 15,818,281 | ||
Oct 18 | HL016 | Exome | s4,CV-iPS | - | Zhang Lab | Alice(10/09) | 40bp | 16,080,730 | ||
Oct 18 | HL016 | Exome | s5,DF6 | - | Zhang Lab | Alice(10/09) | 40bp | 16,231,745 | ||
Oct 18 | HL016 | Exome | s6,DF6 | - | Zhang Lab | Alice(10/09) | 40bp | 16,377,593 | ||
Oct 18 | HL016 | Exome | s7,Foreskin | - | Zhang Lab | Alice(10/09) | 40bp | 15,732,166 | ||
Oct 18 | HL016 | Exome | s8,Foreskin | - | Zhang Lab | Alice(10/09) | 40bp | 15,019,512 | ||
Oct 15 | HL015 | Exome | s1,PGP8 | - | Zhang Lab | Billy | 40bp | 13,429,437 | ||
Oct 15 | HL015 | Exome | s2,PGP8 | - | Zhang Lab | Billy | 40bp | 13,978,474 | ||
Oct 15 | HL015 | Exome | s3,PGP8 | - | Zhang Lab | Billy | 40bp | 13,935,910 | ||
Oct 15 | HL015 | Exome | s4,PGP9 | - | Zhang Lab | Billy | 40bp | 13,692,249 | ||
Oct 15 | HL015 | Exome | s5,PGP9 | - | Zhang Lab | Billy | 40bp | 12,912,972 | ||
Oct 15 | HL015 | Exome | s6,PGP9 | - | Zhang Lab | Billy | 40bp | 12,823,767 | ||
Oct 15 | HL015 | Exome | s7,NA12878 | - | Zhang Lab | Billy | 40bp | 16,883,674 | ||
Oct 15 | HL015 | Exome | s8,NA12878 | - | Zhang Lab | Billy | 40bp | 15,379,183 | ||
Oct 12 | HL014 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice(10/09) | 40bp | 8,305,141 | ||
Oct 12 | HL014 | Exome | s2,foreskin | - | Zhang Lab | Alice(10/09) | 40bp | 8,488,946 | ||
Oct 12 | HL014 | Exome | s3,PGP1-ips | - | Zhang Lab | Alice(10/09) | 40bp | 5,966,433 | ||
Oct 12 | HL014 | Exome | s4,CV-ips | - | Zhang Lab | Alice(10/09) | 40bp | 4,351,085 | ||
Oct 12 | HL014 | Exome | s5,CV-fibroblast | - | Zhang Lab | Alice(10/09) | 40bp | 3,621,861 | ||
Oct 12 | HL014 | Exome | s6,PGP7 | - | Zhang Lab | Alice(10/09) | 40bp | 11,805,391 | ||
Oct 12 | HL014 | Exome | s7,PGP8 | - | Zhang Lab | Billy | 40bp | 14,330,453 | ||
Oct 12 | HL014 | Exome | s8,PGP9 | - | Zhang Lab | Billy | 40bp | 12,477,329 | ||
Oct 08 | HL013 | Exome | s1,PGP1 | - | Zhang Lab | Billy | 40bp | 14872773 | ||
Oct 08 | HL013 | Exome | s2,PGP2 | - | Zhang Lab | Billy | 40bp | 13777534 | ||
Oct 08 | HL013 | Exome | s3,PGP3 | - | Zhang Lab | Billy | 40bp | 10536677 | ||
Oct 08 | HL013 | Exome | s4,PGP5 | - | Zhang Lab | Billy | 40bp | 8445974 | ||
Oct 08 | HL013 | BSPP-30k | s5,DF6-9-9-cpg30k | - | Zhang Lab | Ida | 40bp | 9684020 | ||
Oct 08 | HL013 | BSPP-30k | s6,Foreskin | - | Zhang Lab | Ida | 40bp | 13740681 | ||
Oct 08 | HL013 | USC-Hsieh | s7,USC,MH010B xMboI | - | Zhang Lab | Kyle | 40bp | 18388915 | ||
Oct 08 | HL013 | USC-Hsieh | s8,USC,TCF #3 | - | Zhang Lab | Kyle | 40bp | 14866071 | ||
Oct 05 | HL011 | Exome | s1,PGP8 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | Exome | s2,PGP8 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | Exome | s3,PGP9 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | Exome | s4,PGP9 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | Exome | s5,NA12878 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | Exome | s6,NA12878 | - | Zhang Lab | Billy | 40bp | |||
Oct 05 | HL011 | USC-Hsieh | s7,USC,MH010B xMboI | - | Zhang Lab | Kyle | 40bp | |||
Oct 05 | HL011 | USC-Hsieh | s8,USC,TCF #3 | - | Zhang Lab | Kyle | 40bp | |||
Oct 01 | HL012 | Exome | s1,CV-ips (unsheared) | - | Zhang Lab | Alice&Ida | 80bp | 16,072,089 | ||
Oct 01 | HL012 | Exome | s2,CV-Fibr(unsheared) | - | Zhang Lab | Alice&Ida | 80bp | 16,826,803 | ||
Oct 01 | HL012 | Exome | s3,NA21687, Cpg97k | - | Zhang Lab | Ida | 80bp | 8,235,105 | ||
Oct 01 | HL012 | Exome | s4,PhiX | - | Zhang Lab | Illumina | 80bp | 14,496,850 | ||
Oct 01 | HL012 | Exome | s5,NA21781 | - | Zhang Lab | Ida | 80bp | 0 | ||
Oct 01 | HL012 | Exome | s6,NA21833 | - | Zhang Lab | Ida | 80bp | 3,293,913 | ||
Oct 01 | HL012 | Exome | s7,NA21660 | - | Zhang Lab | Ida | 80bp | 8,297 | ||
Oct 01 | HL012 | Exome | s8,NA21731 | - | Zhang Lab | Ida | 80bp | 11,048,272 | ||
Sept 26 | HL010 | Exome | s1,CV-ips | - | Zhang Lab | Alice(09/21) | 40bp | 17,770,197 | 13,270,733 | |
Sept 26 | HL010 | Exome | s2,CV-ips | - | Zhang Lab | Alice | 40bp | 17,143,085 | ||
Sept 26 | HL010 | Exome | s3,CV-fibroblast | - | Zhang Lab | Alice(09/21) | 40bp | 14,248,797 | ||
Sept 26 | HL010 | Exome | s4,CV-fibroblast | - | Zhang Lab | Alice(09/21) | 40bp | 13,741,749 | ||
Sept 26 | HL010 | Exome | s5,DF6-9-9 | - | Zhang Lab | Alice(09/21) | 40bp | 14,210,912 | ||
Sept 26 | HL010 | Exome | s6,foreskin | - | Zhang Lab | Alice(09/21) | 40bp | 14,514,230 | ||
Sept 26 | HL010 | Exome | s7,PGP8 | - | Zhang Lab | Billy | 40bp | 11,980,992 | ||
Sept 26 | HL010 | Exome | s8,PGP9 | - | Zhang Lab | Billy | 40bp | 13,292,848 | ||
Sept 23 | AL003 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice(09/21) | 40bp | 16,395,953 | 13,954,426 | |
Sept 23 | AL003 | Exome | s2,foreskin | - | Zhang Lab | Alice(09/21) | 40bp | 17,323,121 | 14,344,756 | |
Sept 23 | AL003 | Exome | s3,PGP1-ips | - | Zhang Lab | Alice(09/21) | 40bp | 17,005,060 | ||
Sept 23 | AL003 | Exome | s4,CV-ips | - | Zhang Lab | Alice(09/21) | 40bp | 17,848,289 | 13,344,177 | |
Sept 23 | AL003 | Exome | s5,CV-fibroblast | - | Zhang Lab | Alice(09/21) | 40bp | 18,152,672 | 15,372,979 | |
Sept 23 | AL003 | Exome | s6,NA12878-3 | - | Zhang Lab | Alice(09/21) | 40bp | 18,391,593 | 14,109,009 | |
Sept 23 | AL003 | USC-Hsieh | s7,DK4#2 | - | Zhang Lab | Kyle | 40bp | 13,632,900 | 11,976,351 | |
Sept 23 | AL003 | USC-HSieh | s8,TK9 | - | Zhang Lab | Kyle | 40bp | 16,272,821 | 15,168,255 | |
Sept 18 | AL002 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice(09/15) | 40bp | 16,173,475 | ||
Sept 18 | AL002 | Exome | s2,foreskin | - | Zhang Lab | Alice(09/15) | 40bp | 10,863,012 | ||
Sept 18 | AL002 | Exome | s3,CV-ips | - | Zhang Lab | Alice(09/15) | 40bp | 8,306,219 | ||
Sept 18 | AL002 | Exome | s4,CV-fibroblast | - | Zhang Lab | Alice(09/15) | 40bp | 3,987,069 | ||
Sept 18 | AL002 | - | s5,PhiX-2nd | - | Zhang Lab | Alice | 40bp | - | ||
Sept 18 | AL002 | USC-Hsieh | s6,MH001 H2 xHeaIII | - | Zhang Lab | Kyle | 40bp | 19,490,463 | 18,566,845 | |
Sept 18 | AL002 | USC-Hsieh | s7,MH010B xDpnI | - | Zhang Lab | Kyle | 40bp | 19,160,830 | 18,435,611 | |
Sept 18 | AL002 | USC-Hsieh | s8,Tk4 #2 | - | Zhang Lab | Kyle | 40bp | 16,343,257 | 15,039,726 | |
Sept 11 | AL001 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice | 40bp | 5,115,027 | ||
Sept 11 | AL001 | Exome | s2,foreskin | - | Zhang Lab | Alice | 40bp | 1,480,281 | ||
Sept 11 | AL001 | - | s3,PhiX-2nd(re-amplified) | - | Zhang Lab | Alice | 40bp | 12,640,504 | ||
Sept 11 | AL001 | - | s4,PhiX | - | Zhang Lab | - | 40bp | 12,737,950 | ||
Sept 11 | AL001 | BSPP | s5,Na21660-cpg97k | - | Zhang Lab | Jie | 40bp | 1,624,500 | 15% | |
Sept 11 | AL001 | BSPP | s6,DFips-cpg30k+97k | - | Zhang Lab | Jie | 40bp | 12,230,825 | 52% | |
Sept 11 | AL001 | USC-Hsieh | s7,MH010B x DpnI | - | Zhang Lab | Kyle | 40bp | - | ||
Sept 11 | AL001 | USC-Hsieh | s8,Pol II | - | Zhang Lab | Kyle | 40bp | 7,545,937 | 4,581,330 | |
Sept 07 | HL007 | Exome | s1,PGP4 | - | Zhang Lab | Billy | 36bp | 12,221,023 | - | |
Sept 07 | HL007 | Exome | s2,PGP4 | - | Zhang Lab | Billy | 36bp | 12,462,164 | - | |
Sept 07 | HL007 | Exome | s3,PGP6 | - | Zhang Lab | Billy | 36bp | 12,781,093 | - | |
Sept 07 | HL007 | Exome | s4,PGP6 | - | Zhang Lab | Billy | 36bp | 13,207,084 | - | |
Sept 07 | HL007 | Exome | s5,PGP10 | - | Zhang Lab | Billy | 36bp | 11,853,340 | - | |
Sept 07 | HL007 | Exome | s6,PGP10 | - | Zhang Lab | Billy | 36bp | 12,091,086 | - | |
Sept 07 | HL007 | BSPP-97k | s7,50192A | - | Zhang Lab | Jie | 36bp | 17,131,060 | 29% | |
Sept 07 | HL007 | BSPP-97k | s8,50192B | - | Zhang Lab | Jie | 36bp | 16,378,655 | 28% | |
August 29 | HL009-3 | Exome | s1,DF6-9-9 | 60nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s2,DF6-9-9 | 60nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s3,foreskin | 45nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s4,foreskin | 45nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s5,PGP1-ips | 38nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s6,CV-ips | 90nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s7,CV-fibroblast | 76nM | Zhang Lab | Alice | 40bp | - | ||
August 29 | HL009-3 | Exome | s8,PGP1 | 34nM | Zhang Lab | Alice | 40bp | - | ||
August 26 | HL008 | Exome | s1,PGP4 | - | Zhang Lab | Billy | 40bp | 14295243 | - | |
August 26 | HL008 | Exome | s2,PGP6 | - | Zhang Lab | Billy | 40bp | 15558898 | - | |
August 26 | HL008 | Exome | s3,PGP10 | - | Zhang Lab | Billy | 40bp | 15871619 | - | |
August 26 | HL008 | BSPP-97k | s4,50192A | - | Zhang Lab | Jie | 40bp | 10401608 | - | |
August 26 | HL008 | BSPP-97k | s5,50192B | - | Zhang Lab | Jie | 40bp | 9693893 | - | |
August 26 | HL008 | Exome | s6,Foreskin | - | Zhang Lab | Alice | 40bp | 14739764 | - | |
August 26 | HL008 | Exome | s7,PGP4(MmeI) | - | Zhang Lab | Billy | 40bp | 12106286 | - | |
August 26 | HL008 | Control | s8,PhiX | - | Zhang Lab | Illumina | 40bp | 10161944 | - | |
August 16 | HL006 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice | 40bp | 5,684,406 | - | |
August 16 | HL006 | Exome | s2,Foreskin | - | Zhang Lab | Alice | 40bp | 8,009,671 | - | |
August 16 | HL006 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 8,369,819 | - | |
August 16 | HL006 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 7,487,512 | - | |
August 16 | HL006 | Exome | s5,NA12878-lig | - | Zhang Lab | Alice | 40bp | 8,411,077 | - | |
August 16 | HL006 | Exome | s6,NA12878 | - | Zhang Lab | Billy | 40bp | 8,556,271 | - | |
August 16 | HL006 | Exome | s7,PGP10 | - | Zhang Lab | Billy | 40bp | 9,736,297 | - | |
August 16 | HL006 | Control | s8,PhiX | - | Zhang Lab | Illumina | 40bp | 6,985,337 | - | |
August 13 | HL005 | Exome | NA12878 | - | Zhang lab | Billy | 40bp | 15,666,228 | ||
August 13 | HL005 | Exome | NA12878 | - | Zhang lab | Billy | 40bp | 14,091,504 | ||
August 13 | HL005 | BSPP-97k | Par1 | - | Zhang lab | Jie Deng | 40bp | 10,385,536 | 3,005,889 | 12% |
August 13 | HL005 | BSPP-97k | Par9 | - | Zhang lab | Jie Deng | 40bp | 7,537,771 | 3,430,524 | 21% |
August 13 | HL005 | USC-Hsieh | MH010B xMboI | - | Zhang lab | Kyle | 40bp | 6,699,431 | 6,125,263 | |
August 13 | HL005 | USC-Hsieh | MH010B xDpnI | - | Zhang lab | Kyle | 40bp | 2,204,512 | 2,094,844 | |
August 13 | HL005 | Exome(end-sequencing) | PGP2S-Phu | 54.5nM | Zhang lab | Alice Li | 40bp | 7,022,465 | 5,950,793 | |
August 13 | HL005 | Exome(end-sequencing) | PGP2S-iProof | 60.6nM | Zhang lab | Alice Li | 40bp | 5,798,969 | 4,756,952 | |
August 09 | HL004 | Exome | s1,DF6-9-9-lig | - | Zhang Lab | Alice | 40bp | 17,147,112 | - | |
August 09 | HL004 | Exome | s2,DF6-9-9-lig | - | Zhang Lab | Alice | 40bp | 16,956,048 | - | |
August 09 | HL004 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 16,802,403 | - | |
August 09 | HL004 | Exome | s4,PGP10 | - | Zhang Lab | Billy | 40bp | 18,644,730 | - | |
August 09 | HL004 | Exome | s5,PGP4 | - | Zhang Lab | Billy | 40bp | 18,809,762 | - | |
August 09 | HL004 | Exome | s6,PGP4 | - | Zhang Lab | Billy | 40bp | 18,970,955 | - | |
August 09 | HL004 | Exome | s7,PGP6 | - | Zhang Lab | Billy | 40bp | 18,723,412 | - | |
August 09 | HL004 | Exome | s8,PGP6 | - | Zhang Lab | Billy | 40bp | 19,233,480 | - | |
August 05 | HL003 | Exome | s1,DF6-9-9 | - | Zhang Lab | Alice | 40bp | 4,417,586 | 2,288,789 | |
August 05 | HL003 | Exome | s2,Foreskin | - | Zhang Lab | Alice | 40bp | 5,020,353 | 3,214,546 | |
August 05 | HL003 | Exome | s3,Foreskin-lig | - | Zhang Lab | Alice | 40bp | 6,660,328 | 3,119,331 | |
August 05 | HL003 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 3,727,520 | 1,981,326 | |
August 05 | HL003 | Exome | s5,NA12878-lig | - | Zhang Lab | Alice | 40bp | 6,455,281 | 3,253,093 | |
August 05 | HL003 | Exome | s6,NA12878 | - | Zhang Lab | Billy | 40bp | 14,992,076 | 8,643,897 | |
August 05 | HL003 | Exome | s7,PGP10 | - | Zhang Lab | Billy | 40bp | 19,423,381 | 11,040,240 | |
August 05 | HL003 | Control | s8,PhiX | - | Zhang Lab | Illumina | 40bp | 20,078,536 | 19,817,515 | |
July 28 | HL002 | Exome | s1,PhiX | - | Zhang Lab | Illumina | 40bp | 19474917 | - | |
July 28 | HL002 | Exome | s2,Hues 6 ES-Dscp | - | Zhang Lab | Kun | 40bp | 9991852 | - | |
July 28 | HL002 | Exome | s3,Hues 6 ES-trp | - | Zhang Lab | Kun | 40bp | 8386791 | - | |
July 28 | HL002 | Exome | s4,NA12878 | - | Zhang Lab | Alice | 40bp | 15015962 | - | |
July 28 | HL002 | Exome | s5,NA12878 | - | Zhang Lab | Alice | 40bp | 15092576 | - | |
July 28 | HL002 | Exome | s6,NA12878 | - | Zhang Lab | Alice | 40bp | 15223607 | - | |
July 28 | HL002 | Exome | s7,PGP10 | - | Zhang Lab | Alice | 40bp | 15059266 | - | |
July 28 | HL002 | RNA | s8,CES8k-Hybrid1-ES | - | Zhang Lab | Kun | 40bp | 8178891 | - |
Jan-Jun
Month | Date | Probe Set | Tube label | Conc. x vol. | Seq facility | Lib. Const. | Read length | # filtered reads | # mappable reads |
Feb | 6 | BSPP-30k-PE | BJ | 75.4nM x 15ul; | BioGem | Jie | 36bp x 2 | 7,662,828 | 2,535,784 |
Feb | 6 | BSPP-30k-PE | Hybrid_1 | 87.6nM x 15ul; | BioGem | Jie | 36bp x 2 | 6,829,142 | 1,946,531 |
Feb | 6 | BSPP-30k-PE | PGP1_F | 106nM x 15ul; | BioGem | Jie | 36bp x 2 | 8,441,376 | 2,854,604 |
Feb | 6 | BSPP-30k-PE | HUES12 | 74.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 7,404,514 | 1,424,697 |
Feb | 6 | BSPP-30k-PE | PGP1_iPS1 | 90.3nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,617,832 | 1,899,427 |
Feb | 6 | BSPP-30k-PE | PGP1_L | 77.6nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,258,188 | 2,220,886 |
Feb | 6 | BSPP-30k-PE | PGP3_L | 80.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,286,442 | 1,838,971 |
Feb | 6 | BSPP-30k-PE | PGP9_L | 96.9nM x 15ul; | BioGem | Jie | 36bp x 2 | 5,689,552 | 2,292,028 |
March | 13 | Exome | PGP1-CTRL | 48.5ng/ul; 30ul | Billy Li (Harvard) | Alice Li | 40bp | 9,707,995 | 7,655,774 |
March | 13 | Exome | PGP1-shaked | 46ng/ul; 30ul | Billy Li (Harvard) | Alice Li | 40bp | 9,424,752 | 7,561,445 |
May | 25 | Exome | PGP1E0509A | 77nM; 40ul | BioGem | Alice Li | 76bp | 7,471,741 | 1,086,264 |
May | 25 | Exome | PGP2E0509A | 64nM; 40ul | BioGem | Alice Li | 76bp | 5,014,823 | 2,595,521 |
May | 25 | Exome | PGP3E0509A | 49.5nM; 40ul | BioGem | Alice Li | 76bp | 5,358,442 | 3,213,790 |
May | 25 | Exome | NA12878E0509A | 60nM; 40ul | BioGem | Alice Li | 76bp | 7,360,495 | 2,673,495 |
May | 25 | Exome | PGP1E0509k | 19nM; 40ul | BioGem | Kun Zhang | 76bp | 3,520,981 | 2,350,708 |
May | 25 | Exome | PGP2E0509k | 20nM; 40ul | BioGem | Kun Zhang | 76bp | 5,095,881 | 2,568,349 |
May | 25 | Exome | PGP3E0509k | 19nM; 40ul | BioGem | Kun Zhang | 76bp | 3,734,068 | 1,989,542 |
May | 25 | Exome | NA12878E0509k | 33nM; 40ul | BioGem | Kun Zhang | 76bp | 3,900,764 | 778,134 |
May | 26 | BSPP_end seq | NA21070*1 100406 captured targets | 25.3ng/ul (96nM) x 15ul; | Yuan Gao | Jie/Kun | 40bp | 2,535,463 | |
May | 26 | BSPP_end seq | NA21070*1 100406 normalized captured targets | 23.1ng/ul (87nM) x 15ul; | Yuan Gao | Jie/Kun | 40bp | 2,377,687 | |
May | 29 | Exome(end sequencing) | PGP2_052909A | 111nM; 15ul | Yuan Gao | Alice Li | 40bp | 6,390,979 | |
May | 29 | Exome(end sequencing) | PGP3_052909A | 126nM; 15ul | Yuan Gao | Alice Li | 40bp | 6,110,991 | |
June | 4 | Exome | PGP5-1-060809 | 62.5nM; 10ul | BioGem | Alice Li | 36bp | 14,404,283 | 10,812,047 |
June | 4 | Exome | PGP5-2-060809 | 65.7nM; 10ul | BioGem | Alice Li | 36bp | 14,994,770 | 11,253,456 |
June | 4 | Exome | PGP7-1-060809 | 75.5nM; 10ul | BioGem | Alice Li | 36bp | 13,384,832 | 9,712,648 |
June | 4 | Exome | PGP7-2-060809 | 79.7nM; 20ul | BioGem | Alice Li | 36bp | 14,204,382/13,509,137 | 10,519,374/9,961,481 |
June | 8 | BSPP | DF6-9-9_P16(4) | 11nM x 10ul x 2 lanes; | BioGem | Jie | 36bp | 4,688,926 | |
June | 8 | BSPP | foreskin | 15nM x 10ul x 1 lane. | BioGem | Jie | 36bp | 3,320,865 | 1,825,557 |
June | 10 | Exome | PGP1-3-061009 | 34nM; 15ul | Bing Ren | Alice Li | 76bp | 5,802,565 | |
June | 10 | Exome | PGP2-3-061009 | 25nM; 15ul | Bing Ren | Alice Li | 76bp | 3,193,644 | |
June | 10 | Exome | PGP3-3-061009 | 22nM; 15ul | Bing Ren | Alice Li | 76bp | 2,465,788 | |
June | 10 | Exome | NA12878-3-061009 | 22nM; 15ul | Bing Ren | Alice Li | 76bp | 1,285,265 | |
June | 10 | BSPP | NA21070*1_100406_97k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 2,682,703 | 424,191 |
June | 10 | BSPP | DF6-9-9_P16(4)_30k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 918,811 | 151,519 |
June | 10 | BSPP | foreskin_30k | 21.2nM x 14ul; | Bing Ren | Jie | 76bp | 424,770 | 65,177 |
June | 18 | Exome | PGP5-1-060809 | 62.5nM; 5ul | Bing Ren | Alice Li | 41bp | 4,122,460 | |
June | 18 | Exome | PGP5-2-060809 | 65.7nM; 5ul | Bing Ren | Alice Li | 41bp | 3,907,906 | |
June | 18 | Exome | PGP7-1-060809 | 75.5nM; 5ul | Bing Ren | Alice Li | 41bp | 1,419,496 | |
June | 18 | CES27k9bp_end sequening | Hybrid_1_CES27k9bp | 4.3ng/ul (37nM) x 5ul | Bing Ren | Jie | 41bp | 7,484,832 | |
June | 18 | CES27k9bp_end sequening | BJ_CES27k9bp | 7.2ng/ul (62nM) x 5ul | Bing Ren | Jie | 41bp | 5,643,984 | |
June | 18 | BSPP | DF6-9-9_P16(4)_97k_repeat | 11nM x 5ul | Bing Ren | Jie | 41bp | 4,761,133 | |
June | 18 | BSPP | foreskin_97k_repeat | 7.5nM x 5ul | Bing Ren | Jie | 41bp | 6,683,303 |