Athurva Gore/LabNotes/2009-8-14: Difference between revisions

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{{ AGLabEntry|2009-8-13|2009-8-15 }}
{{ AGLabEntry|2009-8-13|2009-8-15 }}


=Probe Set Generation=
=Probe Generation=
* '''DONE'''
** KKESH72
** RPLCACRD
** CpG-SNP set (with 80 bp gap)
* '''CURRENTLY RUNNING:'''
** FlyDup901
** FlyDup936
** FlyDup5279
** A-to-I Probes for Erez and Billy; currently generating list of sites near splice junctions
*** Can then generate list of nearby exons and probes
*** Then run through scripts as before
* '''TO RERUN:'''
** LeeCancer (on opposite strand to target cDNA)
** LeeXGenes (on opposite strand to target cDNA)
** ZhangSNP (on opposite strand to target cDNA)
** TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)

Revision as of 18:25, 14 August 2009

Navigation

Probe Generation

  • DONE
    • KKESH72
    • RPLCACRD
    • CpG-SNP set (with 80 bp gap)
  • CURRENTLY RUNNING:
    • FlyDup901
    • FlyDup936
    • FlyDup5279
    • A-to-I Probes for Erez and Billy; currently generating list of sites near splice junctions
      • Can then generate list of nearby exons and probes
      • Then run through scripts as before
  • TO RERUN:
    • LeeCancer (on opposite strand to target cDNA)
    • LeeXGenes (on opposite strand to target cDNA)
    • ZhangSNP (on opposite strand to target cDNA)
    • TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)