Athurva Gore/LabNotes/2009-8-14: Difference between revisions
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{{ AGLabEntry|2009-8-13|2009-8-15 }} | {{ AGLabEntry|2009-8-13|2009-8-15 }} | ||
=Probe | =Probe Generation= | ||
* '''DONE''' | |||
** KKESH72 | |||
** RPLCACRD | |||
** CpG-SNP set (with 80 bp gap) | |||
* '''CURRENTLY RUNNING:''' | |||
** FlyDup901 | |||
** FlyDup936 | |||
** FlyDup5279 | |||
** A-to-I Probes for Erez and Billy; currently generating list of sites near splice junctions | |||
*** Can then generate list of nearby exons and probes | |||
*** Then run through scripts as before | |||
* '''TO RERUN:''' | |||
** LeeCancer (on opposite strand to target cDNA) | |||
** LeeXGenes (on opposite strand to target cDNA) | |||
** ZhangSNP (on opposite strand to target cDNA) | |||
** TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?) |
Revision as of 18:25, 14 August 2009
Probe Generation
- DONE
- KKESH72
- RPLCACRD
- CpG-SNP set (with 80 bp gap)
- CURRENTLY RUNNING:
- FlyDup901
- FlyDup936
- FlyDup5279
- A-to-I Probes for Erez and Billy; currently generating list of sites near splice junctions
- Can then generate list of nearby exons and probes
- Then run through scripts as before
- TO RERUN:
- LeeCancer (on opposite strand to target cDNA)
- LeeXGenes (on opposite strand to target cDNA)
- ZhangSNP (on opposite strand to target cDNA)
- TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)