Athurva Gore/LabNotes/2009-8-14: Difference between revisions

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>Ajgore
>Ajgore
Line 10: Line 10:
** FlyDup936
** FlyDup936
** FlyDup5279
** FlyDup5279
** A-to-I Probes for Erez and Billy; currently generating list of sites near splice junctions
** A-to-I Probes for Erez and Billy; currently generating list of inputs for RNA probes
*** Can then generate list of nearby exons and probes
*** Then run through scripts as before
*** Then run through scripts as before
* '''TO RERUN:'''
* '''TO RERUN:'''

Revision as of 18:53, 14 August 2009

Navigation

Probe Generation

  • DONE
    • KKESH72
    • RPLCACRD
    • CpG-SNP set (with 80 bp gap)
  • CURRENTLY RUNNING:
    • FlyDup901
    • FlyDup936
    • FlyDup5279
    • A-to-I Probes for Erez and Billy; currently generating list of inputs for RNA probes
      • Then run through scripts as before
  • TO RERUN:
    • LeeCancer (on opposite strand to target cDNA)
    • LeeXGenes (on opposite strand to target cDNA)
    • ZhangSNP (on opposite strand to target cDNA)
    • TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)