Athurva Gore/LabNotes/2009-8-14: Difference between revisions

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{{ AGLabEntry|2009-8-13|2009-8-15 }}
{{ AGLabEntry|2009-8-13|2009-8-15 }}
=Probe Generation=
* '''DONE'''
** KKESH72
** RPLCACRD
** CpG-SNP set (with 80 bp gap)
* '''CURRENTLY RUNNING:'''
** FlyDup901
** FlyDup936
** FlyDup5279
** A-to-I Probes for Erez and Billy; currently removing unneeded
*** Then, remove duplicates, remove probes that target the wrong strand (new script), and remove unneeded.
*** preBLAST version is in last step of script.
*** Start BLAST, but send out preBLAST version
* '''TO RERUN:'''
** LeeCancer (on opposite strand to target cDNA)
** LeeXGenes (on opposite strand to target cDNA)
** ZhangSNP (on opposite strand to target cDNA)
** TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)
=IPS and Cancer=

Latest revision as of 23:02, 14 August 2009

Navigation[edit]

Probe Generation[edit]

  • DONE
    • KKESH72
    • RPLCACRD
    • CpG-SNP set (with 80 bp gap)
  • CURRENTLY RUNNING:
    • FlyDup901
    • FlyDup936
    • FlyDup5279
    • A-to-I Probes for Erez and Billy; currently removing unneeded
      • Then, remove duplicates, remove probes that target the wrong strand (new script), and remove unneeded.
      • preBLAST version is in last step of script.
      • Start BLAST, but send out preBLAST version
  • TO RERUN:
    • LeeCancer (on opposite strand to target cDNA)
    • LeeXGenes (on opposite strand to target cDNA)
    • ZhangSNP (on opposite strand to target cDNA)
    • TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)

IPS and Cancer[edit]