Athurva Gore/LabNotes/2009-8-14: Difference between revisions
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>Ajgore |
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** FlyDup936 | ** FlyDup936 | ||
** FlyDup5279 | ** FlyDup5279 | ||
** A-to-I Probes for Erez and Billy; currently | ** A-to-I Probes for Erez and Billy; currently removing unneeded | ||
*** | *** Then, remove duplicates, remove probes that target the wrong strand (new script), and remove unneeded. | ||
*** preBLAST version is in last step of script. | |||
*** Start BLAST, but send out preBLAST version | |||
* '''TO RERUN:''' | * '''TO RERUN:''' | ||
** LeeCancer (on opposite strand to target cDNA) | ** LeeCancer (on opposite strand to target cDNA) | ||
Line 17: | Line 19: | ||
** ZhangSNP (on opposite strand to target cDNA) | ** ZhangSNP (on opposite strand to target cDNA) | ||
** TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?) | ** TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?) | ||
=IPS and Cancer= |
Latest revision as of 23:02, 14 August 2009
[edit]
Probe Generation[edit]
- DONE
- KKESH72
- RPLCACRD
- CpG-SNP set (with 80 bp gap)
- CURRENTLY RUNNING:
- FlyDup901
- FlyDup936
- FlyDup5279
- A-to-I Probes for Erez and Billy; currently removing unneeded
- Then, remove duplicates, remove probes that target the wrong strand (new script), and remove unneeded.
- preBLAST version is in last step of script.
- Start BLAST, but send out preBLAST version
- TO RERUN:
- LeeCancer (on opposite strand to target cDNA)
- LeeXGenes (on opposite strand to target cDNA)
- ZhangSNP (on opposite strand to target cDNA)
- TDMR Set (Also check if out-of-memory happens again...maybe run on Miner?)