Athurva Gore/LabNotes/2009-8-19: Difference between revisions
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* 18 bp SNP ProbeSet (cDNA version) | * 18 bp SNP ProbeSet (cDNA version) | ||
** http://genome-tech.ucsd.edu/LabNotes/upload/d/d8/PROBESET_18bp_SNP.txt | ** http://genome-tech.ucsd.edu/LabNotes/upload/d/d8/PROBESET_18bp_SNP.txt | ||
** Parameters: | |||
* Dr. Lee Probesets (18 bp SNP, cDNA) | * Dr. Lee Probesets (18 bp SNP, cDNA) | ||
** http://genome-tech.ucsd.edu/LabNotes/upload/8/82/PROBESET_LeeCancer_output_cDNA.txt | ** http://genome-tech.ucsd.edu/LabNotes/upload/8/82/PROBESET_LeeCancer_output_cDNA.txt | ||
** http://genome-tech.ucsd.edu/LabNotes/upload/9/9e/PROBESET_LeeXGenes_output_cDNA.txt | ** http://genome-tech.ucsd.edu/LabNotes/upload/9/9e/PROBESET_LeeXGenes_output_cDNA.txt | ||
** Parameters: | |||
* Baylor Probesets | * Baylor Probesets | ||
** http://genome-tech.ucsd.edu/LabNotes/upload/5/50/PROBESET_Baylor_RPLCACRD_output_final.txt | ** http://genome-tech.ucsd.edu/LabNotes/upload/5/50/PROBESET_Baylor_RPLCACRD_output_final.txt | ||
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** http://genome-tech.ucsd.edu/LabNotes/upload/9/9d/PROBESET_Baylor_FlyDup901_output_final.txt | ** http://genome-tech.ucsd.edu/LabNotes/upload/9/9d/PROBESET_Baylor_FlyDup901_output_final.txt | ||
** FLYDUP5279 is still running on genome-tech | ** FLYDUP5279 is still running on genome-tech | ||
* | ** Parameters: | ||
=Analyzing False Positives= | =Analyzing False Positives= |
Revision as of 17:38, 20 August 2009
Probeset Upload
- 18 bp SNP ProbeSet (cDNA version)
- Dr. Lee Probesets (18 bp SNP, cDNA)
- Baylor Probesets
- http://genome-tech.ucsd.edu/LabNotes/upload/5/50/PROBESET_Baylor_RPLCACRD_output_final.txt
- http://genome-tech.ucsd.edu/LabNotes/index.php/Image:PROBESET_Baylor_KKESH72_output_final.txt
- http://genome-tech.ucsd.edu/LabNotes/upload/1/1b/PROBESET_Baylor_FlyDup936_output_final.txt
- http://genome-tech.ucsd.edu/LabNotes/upload/9/9d/PROBESET_Baylor_FlyDup901_output_final.txt
- FLYDUP5279 is still running on genome-tech
- Parameters:
Analyzing False Positives
- G-A bias? Check, Rob noticed it in his data
IPS and Cancer
Classifying SNPs
- Can we remove false positives with an algorithm?