Athurva Gore/LabNotes/2009-9-8: Difference between revisions
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>Ajgore (New page: {{ AGLabEntry|2009-9-4|2009-9-9 }} =Exome Sequencing=) |
>Ajgore No edit summary |
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=Exome Sequencing= | =Exome Sequencing= | ||
* Created script to trim first base off of reads. | |||
** Did not affect as well as I had hoped. | |||
==PGP5 and PGP7== | |||
* After trimming first base and removing reads with SNPs in last 15 bp: | |||
** PGP5: 11897 in dbSNP, 1752 not in dbSNP, (87.16% in dbSNP) | |||
** PGP7: 13503 in dbSNP, 2613 not in dbSNP, (83.79% in dbSNP) | |||
* Still very high rate of non-dbSNP. |
Revision as of 17:36, 8 September 2009
Exome Sequencing
- Created script to trim first base off of reads.
- Did not affect as well as I had hoped.
PGP5 and PGP7
- After trimming first base and removing reads with SNPs in last 15 bp:
- PGP5: 11897 in dbSNP, 1752 not in dbSNP, (87.16% in dbSNP)
- PGP7: 13503 in dbSNP, 2613 not in dbSNP, (83.79% in dbSNP)
- Still very high rate of non-dbSNP.