Athurva Gore/LabNotes/2009-9-8: Difference between revisions

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(New page: {{ AGLabEntry|2009-9-4|2009-9-9 }} =Exome Sequencing=)
 
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=Exome Sequencing=
=Exome Sequencing=
* Created script to trim first base off of reads.
** Did not affect as well as I had hoped.
==PGP5 and PGP7==
* After trimming first base and removing reads with SNPs in last 15 bp:
** PGP5: 11897 in dbSNP, 1752 not in dbSNP, (87.16% in dbSNP)
** PGP7: 13503 in dbSNP, 2613 not in dbSNP, (83.79% in dbSNP)
* Still very high rate of non-dbSNP.

Revision as of 17:36, 8 September 2009

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Exome Sequencing

  • Created script to trim first base off of reads.
    • Did not affect as well as I had hoped.

PGP5 and PGP7

  • After trimming first base and removing reads with SNPs in last 15 bp:
    • PGP5: 11897 in dbSNP, 1752 not in dbSNP, (87.16% in dbSNP)
    • PGP7: 13503 in dbSNP, 2613 not in dbSNP, (83.79% in dbSNP)
  • Still very high rate of non-dbSNP.