Athurva Gore/LabNotes/2010-1-7: Difference between revisions

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>Ajgore
Line 12: Line 12:
** HL030
** HL030
* Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
* Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
* Should we incorporate older reads?
** Should we incorporate older reads?
* Map one lane from each flowcell to get a general idea of mapping rate.
** Fill in the below table:
{| {{table}}
| align="center" style="background:#f0f0f0;"|'''Flowcell'''
| align="center" style="background:#f0f0f0;"|'''Lane'''
| align="center" style="background:#f0f0f0;"|'''Number of Reads'''
| align="center" style="background:#f0f0f0;"|'''Mapped Reads'''
| align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads'''
|-
| HL013||||||||
|-
| HL024||||||||
|-
| HL025||||||||
|-
| HL029||||||||
|-
| HL019||||||||
|-
| HL014||||||||
|-
| HL028||||||||
|-
| HL015||||||||
|-
| HL027||||||||
|-
| HL030||||||||
|-
|
|}


=iPS and Cancer=
=iPS and Cancer=

Revision as of 23:05, 7 January 2010

PGP

  • If we only use data from October or newer, we have the following data sets:
    • HL013
    • HL024
    • HL025
    • HL029
    • HL019
    • HL014
    • HL028
    • HL015
    • HL027
    • HL030
  • Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
    • Should we incorporate older reads?
  • Map one lane from each flowcell to get a general idea of mapping rate.
    • Fill in the below table:
Flowcell Lane Number of Reads Mapped Reads Mapped Downsampled Reads
HL013
HL024
HL025
HL029
HL019
HL014
HL028
HL015
HL027
HL030

iPS and Cancer

  • Waiting to hear back from Science
    • First advisor didn't really seem to read paper
    • If no response, try with Nature
  • Rewriting as Letter to Nature
    • Guidelines: LINK
    • ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
  • Mostly done with rewrite; need to go over text of paper and edit the additions made