Athurva Gore/LabNotes/2010-1-7: Difference between revisions
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>Ajgore (→PGP) |
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** HL030 | ** HL030 | ||
* Need to find the mapping rate for each one; can guess its usefulness in the data set this way. | * Need to find the mapping rate for each one; can guess its usefulness in the data set this way. | ||
* Should we incorporate older reads? | ** Should we incorporate older reads? | ||
* Map one lane from each flowcell to get a general idea of mapping rate. | |||
** Fill in the below table: | |||
{| {{table}} | |||
| align="center" style="background:#f0f0f0;"|'''Flowcell''' | |||
| align="center" style="background:#f0f0f0;"|'''Lane''' | |||
| align="center" style="background:#f0f0f0;"|'''Number of Reads''' | |||
| align="center" style="background:#f0f0f0;"|'''Mapped Reads''' | |||
| align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads''' | |||
|- | |||
| HL013|||||||| | |||
|- | |||
| HL024|||||||| | |||
|- | |||
| HL025|||||||| | |||
|- | |||
| HL029|||||||| | |||
|- | |||
| HL019|||||||| | |||
|- | |||
| HL014|||||||| | |||
|- | |||
| HL028|||||||| | |||
|- | |||
| HL015|||||||| | |||
|- | |||
| HL027|||||||| | |||
|- | |||
| HL030|||||||| | |||
|- | |||
| | |||
|} | |||
=iPS and Cancer= | =iPS and Cancer= |
Revision as of 23:05, 7 January 2010
PGP
- If we only use data from October or newer, we have the following data sets:
- HL013
- HL024
- HL025
- HL029
- HL019
- HL014
- HL028
- HL015
- HL027
- HL030
- Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
- Should we incorporate older reads?
- Map one lane from each flowcell to get a general idea of mapping rate.
- Fill in the below table:
Flowcell | Lane | Number of Reads | Mapped Reads | Mapped Downsampled Reads |
HL013 | ||||
HL024 | ||||
HL025 | ||||
HL029 | ||||
HL019 | ||||
HL014 | ||||
HL028 | ||||
HL015 | ||||
HL027 | ||||
HL030 | ||||
iPS and Cancer
- Waiting to hear back from Science
- First advisor didn't really seem to read paper
- If no response, try with Nature
- Rewriting as Letter to Nature
- Guidelines: LINK
- ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
- Mostly done with rewrite; need to go over text of paper and edit the additions made