Athurva Gore/LabNotes/2010-1-7: Difference between revisions

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| align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads'''
| align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads'''
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| HL013|||||||
| HL013||||||||
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| HL014|||||||
| HL014||||||||
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| HL015|||||||
| HL015||||||||
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| HL019|||||||
| HL019||||||||
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|-
| HL024|||||||
| HL024||||||||
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| HL025|||||||
| HL025||||||||
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| HL027|||||||
| HL027||||||||
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| HL028|||||||
| HL028||||||||
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| HL029|||||||
| HL029||||||||
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| HL030|||||||
| HL030|||||||

Revision as of 23:09, 7 January 2010

PGP

  • If we only use data from October or newer, we have the following data sets:
    • HL013
    • HL024
    • HL025
    • HL029
    • HL019
    • HL014
    • HL028
    • HL015
    • HL027
    • HL030
  • Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
    • Should we incorporate older reads?
  • Map one lane from each flowcell to get a general idea of mapping rate.
    • Fill in the below table:
Flowcell Lane Number of Reads Mapped Reads Mapped Downsampled Reads
HL013
HL014
HL015
HL019
HL024
HL025
HL027
HL028
HL029
HL030

iPS and Cancer

  • Waiting to hear back from Science
    • First advisor didn't really seem to read paper
    • If no response, try with Nature
  • Rewriting as Letter to Nature
    • Guidelines: LINK
    • ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
  • Mostly done with rewrite; need to go over text of paper and edit the additions made