Athurva Gore/LabNotes/2010-1-7: Difference between revisions
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>Ajgore (→PGP) |
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Line 11: | Line 11: | ||
** HL027 | ** HL027 | ||
** HL030 | ** HL030 | ||
** AL006 | |||
* Need to find the mapping rate for each one; can guess its usefulness in the data set this way. | * Need to find the mapping rate for each one; can guess its usefulness in the data set this way. | ||
** Should we incorporate older reads? | ** Should we incorporate older reads? | ||
Line 22: | Line 23: | ||
| align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads''' | | align="center" style="background:#f0f0f0;"|'''Mapped Downsampled Reads''' | ||
|- | |- | ||
| HL013|||||||| | | HL013||1||59491092|||| | ||
|- | |- | ||
| HL014|||||||| | | HL014||6||47862784|||| | ||
|- | |- | ||
| HL015|||||||| | | HL015||1||53717748|||| | ||
|- | |- | ||
| HL019|||||||| | | HL019||4||59623024|||| | ||
|- | |- | ||
| HL024|||||||| | | HL024||1||64242556|||| | ||
|- | |- | ||
| HL025|||||||| | | HL025||1||36424692|||| | ||
|- | |- | ||
| HL027|||||||| | | HL027||8||47824792|||| | ||
|- | |- | ||
| HL028|||||||| | | HL028||6||37242492|||| | ||
|- | |- | ||
| HL029|||||||| | | HL029||1||33484628|||| | ||
|- | |||
| HL030||1||58820868|||| | |||
|- | |||
| AL006||5||57942248|||| | |||
|- | |- | ||
|} | |} | ||
Latest revision as of 19:24, 8 January 2010
PGP[edit]
- If we only use data from October or newer, we have the following data sets:
- HL013
- HL024
- HL025
- HL029
- HL019
- HL014
- HL028
- HL015
- HL027
- HL030
- AL006
- Need to find the mapping rate for each one; can guess its usefulness in the data set this way.
- Should we incorporate older reads?
- Map one lane from each flowcell to get a general idea of mapping rate.
- Fill in the below table:
Flowcell | Lane | Number of Reads | Mapped Reads | Mapped Downsampled Reads |
HL013 | 1 | 59491092 | ||
HL014 | 6 | 47862784 | ||
HL015 | 1 | 53717748 | ||
HL019 | 4 | 59623024 | ||
HL024 | 1 | 64242556 | ||
HL025 | 1 | 36424692 | ||
HL027 | 8 | 47824792 | ||
HL028 | 6 | 37242492 | ||
HL029 | 1 | 33484628 | ||
HL030 | 1 | 58820868 | ||
AL006 | 5 | 57942248 |
iPS and Cancer[edit]
- Waiting to hear back from Science
- First advisor didn't really seem to read paper
- If no response, try with Nature
- Rewriting as Letter to Nature
- Guidelines: LINK
- ~200 word introductory paragraph, ~1500 word text, ~300 word methods summary, ~1000 word methods, and supplementary info
- Mostly done with rewrite; need to go over text of paper and edit the additions made