Athurva Gore/LabNotes/2010-1-8: Difference between revisions
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| HL030||1||58820868||14705217||8827261||8492613||0.6||0.58 | | HL030||1||58820868||14705217||8827261||8492613||0.6||0.58 | ||
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| AL006||5||57942248||14485562|| | | AL006||5||57942248||14485562||10565704||9604607||0.73||0.66 | ||
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Revision as of 21:08, 8 January 2010
PGP
- Dataset mapping table (October through now):
- HL013 to HL030
Flowcell | Lane | Reads Times 4 | Number of Reads | Mapped Reads | Mapped Downsampled Reads | Mapping Rate | % Usable Reads |
HL013 | 1 | 59491092 | 14872773 | 12555897 | 8987088 | 0.84 | 0.6 |
HL014 | 6 | 47862784 | 11965696 | 8324230 | 5959697 | 0.7 | 0.5 |
HL015 | 1 | 53717748 | 13429437 | 9839373 | 6031436 | 0.73 | 0.45 |
HL019 | 4 | 59623024 | 14905756 | 8695192 | 8691338 | 0.58 | 0.58 |
HL024 | 1 | 64242556 | 16060639 | 14817937 | 13563313 | 0.92 | 0.84 |
HL025 | 1 | 36424692 | 9106173 | 8077318 | 6247035 | 0.89 | 0.69 |
HL027 | 8 | 47824792 | 11956198 | 9269899 | 8819601 | 0.78 | 0.74 |
HL028 | 6 | 37242492 | 9310623 | 5979563 | 4630087 | 0.64 | 0.5 |
HL029 | 1 | 33484628 | 8371157 | 3396996 | 3355959 | 0.41 | 0.4 |
HL030 | 1 | 58820868 | 14705217 | 8827261 | 8492613 | 0.6 | 0.58 |
AL006 | 5 | 57942248 | 14485562 | 10565704 | 9604607 | 0.73 | 0.66 |
- We can use this to predict how many usable reads we have for each data set.
- Count of reads for each PGP sample:
Sample | Reads |
PGP1 | 73,656,659 |
PGP2 | 13,777,534 |
PGP3 | 19,642,850 |
PGP4 | 39,022,194 |
PGP5 | 18,620,501 |
PGP6 | 44,542,386 |
PGP7 | 28,619,340 |
PGP8 | 116,237,040 |
PGP9 | 117,277,366 |
PGP10 | 26,108,372 |