Calendar/2010-1-16: Difference between revisions

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  [[Media:AL-Exome-CViB-Jan14-AB.pdf]]
  [[Media:AL-Exome-CViB-Jan14-AB.pdf]]
  [[Media:AL-Exome-CViB-Jan14-CDE.pdf]]
  [[Media:AL-Exome-CViB-Jan14-CDE.pdf]]
{| {{table}}
| ||Well / Set||C(t)||||Difference||nM
|-
| PhiX||A1||6.98||7.06||||
|-
| PhiX||B1||7.2||||||
|-
| PhiX||C1||7.16||||||
|-
| PhiX||D1||6.89||||||
|-
| JD-cpg97k+30k-Breast_cancer-01230B09-Jan15||E1||6.82||6.92||0.14||1.1
|-
| JD-cpg97k+30k-Breast_cancer-01230B09-Jan15||F1||7.09||||||
|-
| JD-cpg97k+30k-Breast_cancer-01230B09-Jan15||G1||6.89||||||
|-
| JD-cpg97k+30k-Breast_cancer-01230B09-Jan15||H1||6.86||||||
|-
|
|}

Revision as of 18:17, 21 January 2010

Quantify libraries with Phi-X ladder qPCR

AL-Exome-CViB-Jan14-AB w/ 1/10 dilution, AL-Exome-CViB-Jan14-CDE w/ 1/10 dilution, Ida's library

Setup
1nm PhiX AL-Exome-CViB-Jan14-AB AL-Exome-CViB-Jan14-CDE
1nm PhiX AL-Exome-CViB-Jan14-AB AL-Exome-CViB-Jan14-CDE
1nm PhiX AL-Exome-CViB-Jan14-AB AL-Exome-CViB-Jan14-CDE
1nm PhiX AL-Exome-CViB-Jan14-AB AL-Exome-CViB-Jan14-CDE
Ida 1/10 AL-Exome-CViB-Jan14-AB 1/10 AL-Exome-CViB-Jan14-CDE
Ida 1/10 AL-Exome-CViB-Jan14-AB 1/10 AL-Exome-CViB-Jan14-CDE
Ida 1/10 AL-Exome-CViB-Jan14-AB 1/10 AL-Exome-CViB-Jan14-CDE
Ida 1/10 AL-Exome-CViB-Jan14-AB 1/10 AL-Exome-CViB-Jan14-CDE
2 Wells X13
DNA 2 26
Syb_FP5 (100uM) 0.2 2.6
Syb_RP7 (100uM) 0.2 2.6
2X Phusion 25 ,
50X SYBR Green 0.2 2.6
H2O 24 312
Total 345.8
   * Dilute sample, 1ul in 9ul ddh2o
   * mix 2ul 1/10 sample with 98ul mix in non-stick tube
   * aliquot 24ul to each well, for each sample use the same tip for every well (Pipet slowly!)

98C 30 sec -> 20 cycles of (98C 10sec->64C 20sec->72C 20sec)->72C 5 min

Media:JD-cpg97k+30k-Breast_cancer-01230B09-Jan15_log.pdf
Media:AL-Exome-CViB-Jan14-AB.pdf
Media:AL-Exome-CViB-Jan14-CDE.pdf
Well / Set C(t) Difference nM
PhiX A1 6.98 7.06
PhiX B1 7.2
PhiX C1 7.16
PhiX D1 6.89
JD-cpg97k+30k-Breast_cancer-01230B09-Jan15 E1 6.82 6.92 0.14 1.1
JD-cpg97k+30k-Breast_cancer-01230B09-Jan15 F1 7.09
JD-cpg97k+30k-Breast_cancer-01230B09-Jan15 G1 6.89
JD-cpg97k+30k-Breast_cancer-01230B09-Jan15 H1 6.86