Athurva Gore/LabNotes/2010-1-27: Difference between revisions

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{| {{table}}
{| {{table}}
| align="center" style="background:#f0f0f0;"|
| align="center" style="background:#f0f0f0;"|'''HL013+HL025 (Sliding Trimmer 5):'''
| align="center" style="background:#f0f0f0;"|'''HL013+HL025 (Sliding Trimmer 5):'''
| align="center" style="background:#f0f0f0;"|''''''
| align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 5:'''
| align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 5:'''
| align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 10:'''
| align="center" style="background:#f0f0f0;"|'''HL013+HL025+HL034, Sliding Trimmer 10:'''

Revision as of 23:50, 27 January 2010

PGP Data

HL034 PGP5 Data

  • Got some new PGP5 data from HL034
    • Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
  • Can we fix it with some trimming?
    • Tried sliding trimmer 5 and 10
    • Merged it into the previous data
    • Got the following results:
HL013+HL025 (Sliding Trimmer 5): HL013+HL025+HL034, Sliding Trimmer 5: HL013+HL025+HL034, Sliding Trimmer 10:
dbSNP 4071 8643 8093
notdbSNP 207 638 486
dbSNP% 95.16% 93.13% 94.34%