Athurva Gore/LabNotes/2010-1-27: Difference between revisions
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** Got the following results: | ** Got the following results: | ||
{| {{table}} | {| {{table border=1}} | ||
| align="center" style="background:#f0f0f0;"| | | align="center" style="background:#f0f0f0;"| | ||
| align="center" style="background:#f0f0f0;"|'''HL013 + HL025, SlideTrim5''' | | align="center" style="background:#f0f0f0;"|'''HL013 + HL025, SlideTrim5''' |
Revision as of 23:52, 27 January 2010
PGP Data
HL034 PGP5 Data
- Got some new PGP5 data from HL034
- Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
- Can we fix it with some trimming?
- Tried sliding trimmer 5 and 10
- Merged it into the previous data
- Got the following results:
HL013 + HL025, SlideTrim5 | HL013 + HL025 + HL034, SlideTrim5 | HL013 + HL025 + HL034, SlideTrim10 | |
dbSNP | 4071 | 8643 | 8093 |
notdbSNP | 207 | 638 | 486 |
dbSNP% | 95.16% | 93.13% | 94.34% |