Athurva Gore/LabNotes/2010-1-27: Difference between revisions
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| align="center" style="background:#f0f0f0;"|'''HL013 + HL025 + ''HL034'', SlideTrim10''' | | align="center" style="background:#f0f0f0;"|'''HL013 + HL025 + ''HL034'', SlideTrim10''' | ||
|- | |- | ||
| align="right" dbSNP||4071||8643||8093 | |||
|- | |- | ||
| notdbSNP| | | notdbSNP||207||638||486 | ||
|- | |- | ||
| dbSNP%||95.16%||93.13%||94.34% | | dbSNP%||95.16%||93.13%||94.34% | ||
|} | |} |
Revision as of 23:53, 27 January 2010
PGP Data
HL034 PGP5 Data
- Got some new PGP5 data from HL034
- Dr. Zhang tried to map it; ended up with a very low dbSNP percentage (~70%)
- Can we fix it with some trimming?
- Tried sliding trimmer 5 and 10
- Merged it into the previous data
- Got the following results:
HL013 + HL025, SlideTrim5 | HL013 + HL025 + HL034, SlideTrim5 | HL013 + HL025 + HL034, SlideTrim10 | |
align="right" dbSNP | 4071 | 8643 | 8093 |
notdbSNP | 207 | 638 | 486 |
dbSNP% | 95.16% | 93.13% | 94.34% |