Kun Zhang: Difference between revisions

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(Replaced content with "We are from the IRGC. This is a warning that as revenge for American strikes against our country, a pipe bomb has been placed in the Lafayette Avenue Presbyterian Church that will be detonated at moment of choosing. Margh Bar Amrika!")
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*[[Kun:LabNotes/ASE|Allele-specific Expression]]
We are from the IRGC. This is a warning that as revenge for American strikes against our country, a pipe bomb has been placed in the Lafayette Avenue Presbyterian Church that will be detonated at moment of choosing.
*[[Kun:LabNotes/CpgSeq|Targeted bisulfite sequencing]]
*[[Kun:LabNotes/ExonomeSeq|Human exome resequencing]]
*[[Kun:LabNotes/Haplotyping|Human haplotyping]]
*[[Kun:LabNotes/GenomeSeq|Genome sequencing]]
*[[Kun:LabNotes/SingleCellExpr|Single-cell transcriptomics]]
__NOTOC__
===Oligonucleotide libraries===
====ASE====
#eSNP84k:[[Media:Amplifiable_MIP_design_KZ_v4.doc|CircPlex V4]]
#CES22k:[[Media:Amplifiable_MIP_design_KZ_v6.doc|CircPlex  V6]]
#CES27k:[[Media:Amplifiable_MIP_design_KZ_v6.doc|CircPlex  V6]]; [[Kun:LabNotes/ASE|Design]]
#CES27k9bp:[[Media:Amplifiable_MIP_design_KZ_v9.doc|CircPlex  V9]]; [[Kun:LabNotes/ASE|Design]]
#CES18bp:[[Media:Amplifiable_MIP_design_KZ_v11.doc|CircPlex  V11]]; [[Kun:LabNotes/ASE|Design]]


====Exon capture====
Margh Bar Amrika!
#E55kv1:[[Media:CircPlex_design_V7.doc|CircPlex  V7]];[[Kun:LabNotes/ExonomeSeq/2007-11-15|Design]]
#Cosmic3760:[[Media:Amplifiable_MIP_design_KZ_v8.doc|CircPlex  V8]];[[Kun:LabNotes/ExonomeSeq/2007-12-21|Design]]
#E27kv2:[[Media:CircPlex_design_V10_DpnII.doc|CircPlex  V10 (Dpn II)]];[[Media:CircPlex_design_V10_nicking.doc|CircPlex  V10(Nicking)]]
#Dec08:[[Media:CircPlex_design_VDec08.doc|CircPlex  VDec08]];[[Kun:LabNotes/ExonomeSeq|Design]];[[Media:Jan09_probe_allocation.xlsx|Jan09 order allocation]];[http://genome-tech.ucsd.edu/LabNotes/upload/large_files/Exome_Probe_info.txt Detailed probe information]
##[[Media:RefExonJan09-1.xlsx.gz|Jan09 Chip 1]] OLID 0225271
##[[Media:RefExonJan09-2.xlsx.gz|Jan09 Chip 2]] OLID 0225281
##[[Media:RefExonJan09-3.xlsx.gz|Jan09 Chip 3]] OLID 0225291
##[[Media:RefExonJan09-4.xlsx.gz|Jan09 Chip 4]] OLID 0225301
##[[Media:RefExonJan09-5.xlsx.gz|Jan09 Chip 5]] OLID 0225311
#Mar09
##[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/ExonomeSeq#March-09_order Mar09-55k] OLID 0232611
#Apr09
##Jan09-6 (binning set) OLID 0237871
##Jan09-7 (binning set) OLID-0237861
#Aug09
##Jan09-8 (binning set) OLID 0248471
##Jan09-9 (binning set) OLID-0253651
 
====BSPP====
#Cpg28k:[[Media:Amplifiable_MIP_design_KZ_v8.doc|CircPlex  V8]]; [[Kun:LabNotes/CpgSeq|Design]]
#[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Agilent_probes.2C_V2_.28April_2008.29 Cpg30k]
#[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Agilent_probes.2C_V3_.28Feb._2009.29 cpgJan09]
##CpgJan09A OLID 0231531
##CpgJan09B OLID 0232541
#[http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/CpgSeq#Mouse_probes_.28Apr._2009.29 CpgMm9A]  OLID 0236741
#DMR220k: [[Kun:LabNotes/CpgSeq#Human_DMR_220k_probe_set_.28May_2010.29|Information]]
 
====Mix set====
#[[Media:ZhangSept09.txt|Sept09, 55k, 140mers]]
##[[Kun:LabNotes/ExonomeSeq/Baylor-exon-Sept09|Baylor-exon-Sept09]], Nicking adaptors, 12,370
##[[Kun:LabNotes/ExonomeSeq/Baylor-HybridCapture-FlyDup901|Baylor-HybridCapture-FlyDup901]], Gnirke 15bp adaptors, 2105
##[[Kun:LabNotes/ASE/CES36k18bp|CES36k18bp]], AP1V6s, 36,456
##[[Kun:LabNotes/ExonomeSeq/bisFirstE8k|bisFirstExon]], AP1V4, 4069, [[Media:CircPlex_design_VDec08.doc|Primer Info]]

Latest revision as of 16:23, 22 June 2025

We are from the IRGC. This is a warning that as revenge for American strikes against our country, a pipe bomb has been placed in the Lafayette Avenue Presbyterian Church that will be detonated at moment of choosing.

Margh Bar Amrika!