Athurva Gore/LabNotes/2010-3-24: Difference between revisions
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>Ajgore (Created page with '=Plan for Today= * Indel calling - run scripts ** CV-iF/CV-F and DF6/FS Exome data ** Nimblegen data (whatever is available) * BSPP Neural Network ** Assemble Cpg97k data, BS_Fir…') |
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=IPS Mutation Paper= | =IPS Mutation Paper= | ||
==Indel Calling== | ==Indel Calling== | ||
* Data to assemble: | |||
{| {{table border="1" cellpadding="4" cellspacing="0" style="border:\#c9c9c9 1px solid; margin: 1em 1em 1em 0; border-collapse: collapse;"}} | |||
| align="center" style="background:#f0f0f0;"|'''Flowcell''' | |||
| align="center" style="background:#f0f0f0;"|'''CV-F''' | |||
| align="center" style="background:#f0f0f0;"|'''CV-iF''' | |||
| align="center" style="background:#f0f0f0;"|'''DF6''' | |||
| align="center" style="background:#f0f0f0;"|'''FS''' | |||
|- | |||
| HL020||s3, s4||s1, s2|||| | |||
|- | |||
| HL022||||||s1, s2||s3, s4 | |||
|- | |||
| HL023||||||s5, s6||s7, s8 | |||
|- | |||
| HL025||s6||s7|||| | |||
|- | |||
| HL026||s1||s5||s6||s7 | |||
|- | |||
| HL036||||||s1 (NimbleGen)||s4 (NimbleGen) | |||
|- | |||
| HL037||||||s3 (NimbleGen)||s8 (NimbleGen) | |||
|} | |||
=BSPP Neural Network= | =BSPP Neural Network= |
Revision as of 17:35, 24 March 2010
Plan for Today
- Indel calling - run scripts
- CV-iF/CV-F and DF6/FS Exome data
- Nimblegen data (whatever is available)
- BSPP Neural Network
- Assemble Cpg97k data, BS_FirstExon data; see how this NN looks
IPS Mutation Paper
Indel Calling
- Data to assemble:
Flowcell | CV-F | CV-iF | DF6 | FS |
HL020 | s3, s4 | s1, s2 | ||
HL022 | s1, s2 | s3, s4 | ||
HL023 | s5, s6 | s7, s8 | ||
HL025 | s6 | s7 | ||
HL026 | s1 | s5 | s6 | s7 |
HL036 | s1 (NimbleGen) | s4 (NimbleGen) | ||
HL037 | s3 (NimbleGen) | s8 (NimbleGen) |