AlanFung:LabNotes/ASE/2010/2010-9-13: Difference between revisions

From ZhangLabWiki
Jump to navigation Jump to search
>Alan6017518
>Alan6017518
Line 42: Line 42:


  3)Combine files
  3)Combine files
*Use Excel to create script for merging ID filles from serval lanes of Data to one file
Use Excel to create script for merging ID filles from serval lanes of Data to one file





Revision as of 22:03, 13 September 2010

Analysis of the Hues6/BJ hybrid data

Summary of experiments

Index Table

gDNA cDNA
HL068_2 HL071 HL068_2 HL071
5+6 5 + 6 7+8 7+8
IND1 N/A H1 gDNA IND1 1000s 1000s
IND2 1000ips 1000ips IND2 1000ips 1000ips
IND3 1034ips 1034ips IND3 1034ips 1034ips
IND4 A2 A2 IND4 A2 A2
IND5 B4 B4 IND5 B4 B4
IND6 1016ips 1016ips IND6 1016s 1016s
IND7 N/A N/A IND7 1016ips 1016ips
IND8 B5 B5 IND8 B5ips B5ips
IND9 Hues6 Hues6 IND9 Hues6 Hues6
IND10 N/A N/A IND10 BJ BJ
IND11 BJ BJ IND11 N/A 1034s
IND12 N/A H1 cDNA IND12 N/A N/A
Wiki KZ 7_22 HL 8_26 HL 7_26 HL 8_26

Workflow

1) Convert using BCL converter
2)Demultiplex
Script for demultiplex
3)Combine files
Use Excel to create script for merging ID filles from serval lanes of Data to one file


4)Run aseBowtieSam.pl
5)Run baseCalls2Ase.pl on local machine