Rui:Data Analysis: Difference between revisions
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==RNAseq analysis key notes== | ==RNAseq analysis key notes== | ||
* iGenome packages | * iGenome packages [http://tophat.cbcb.umd.edu/igenomes.html] | ||
# UCSC genome package: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:Tophat_mapping_10.27.11] | # UCSC genome package: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:Tophat_mapping_10.27.11] | ||
# Ensemble genome package: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:Tophat_11.21.11#Re-download_Ensemble_package_from_iGenome_.5B1.5D] | # Ensemble genome package: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:Tophat_11.21.11#Re-download_Ensemble_package_from_iGenome_.5B1.5D] | ||
* Comparison of RNAseq analysis programs: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:RNAseq_analysis_on_Hiseq111005#Comparison_of_program] | * Comparison of RNAseq analysis programs: [http://genome-tech.ucsd.edu/LabNotes/index.php/Rui:RNAseq_analysis_on_Hiseq111005#Comparison_of_program] |
Revision as of 19:05, 22 November 2011
Examples
Jeff's samples: Kun:LabNotes/Haplotyping/2010-9-17 [1]
Transcriptome: Kun:LabNotes/SingleCellExpr/2011-6-13 [2]
Haplotyping: Kun:LabNotes/Haplotyping/2011-6-14 [3]
Data analysis
- Haplotyping 6.21.11
- RNAseq analysis from 7.18.11
- RNAseq analysis on HL098
- RNAseq analysis on HL099
- RNAseq analysis on HL101
- RNAseq analysis on Hiseq111005
- Hap analysis on HL108
- RNAseq analysis on HL109
RNAseq analysis key notes
- iGenome packages [4]
- Comparison of RNAseq analysis programs: [7]