Rui:Data Analysis: Difference between revisions

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==Examples==
==Examples==
KUN's pipeline:
http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline [http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline]
  Jeff's samples:
  Jeff's samples:
  Kun:LabNotes/Haplotyping/2010-9-17 [http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/Haplotyping/2010-9-17]
  Kun:LabNotes/Haplotyping/2010-9-17 [http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/Haplotyping/2010-9-17]
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*[[Rui:RNAseq analysis on HL099|RNAseq analysis on HL099]]
*[[Rui:RNAseq analysis on HL099|RNAseq analysis on HL099]]
*[[Rui:RNAseq analysis on HL101|RNAseq analysis on HL101]]
*[[Rui:RNAseq analysis on HL101|RNAseq analysis on HL101]]
*[[Rui:RNAseq analysis on Hiseq111005|RNAseq analysis on Hiseq111005]]
*[[Rui:RNAseq analysis on Hiseq111005|RNAseq_PGCsamples on Hiseq111005]]
*[[Rui:RNAseq analysis on Hiseq111005|RNAseq_PGCsamples on Hiseq111005]]
*[[Rui:Hap analysis on HL108|Hap analysis on HL108]]
*[[Rui:Hap analysis on HL108|Hap analysis on HL108]]
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*[[Rui:DNAseq analysis on Hiseq120313|DNAseq analysis on Hiseq120313]]
*[[Rui:DNAseq analysis on Hiseq120313|DNAseq analysis on Hiseq120313]]
*[[Rui:DNAseq analysis on HL118|DNAseq analysis on HL118]]
*[[Rui:DNAseq analysis on HL118|DNAseq analysis on HL118]]
*[[Rui:totoRNAseq on 121226_HL140|totoRNAseq on 121226_HL140]]
*[[Rui:totoRNAseq on 130120_HL141|totoRNAseq on 130120_HL141]]
*[[Rui:totoRNAseq on 130220_HL144|totoRNAseq on 130220_HL144]]
*[[Rui:totoRNAseq on BL-UHRR-IVT-May28_2013|totoRNAseq on BL-UHRR-IVT-May28_2013]]
*[[Rui:totoRNAseq on 131009_HL161|totoRNAseq on 131009_HL161]]


==RNAseq analysis key notes==
==RNAseq analysis key notes==

Latest revision as of 21:02, 31 October 2013

Examples[edit]

KUN's pipeline:
http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline [1]
Jeff's samples:
Kun:LabNotes/Haplotyping/2010-9-17 [2]
Transcriptome:
Kun:LabNotes/SingleCellExpr/2011-6-13 [3]
Haplotyping:
Kun:LabNotes/Haplotyping/2011-6-14 [4]

Data analysis[edit]

RNAseq analysis key notes[edit]

  • iGenome packages [5]
  1. UCSC genome package: [6]
  2. Ensemble genome package: [7]
  • Comparison of RNAseq analysis programs: [8]