Rui:Data Analysis: Difference between revisions

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==Examples==
==Examples==
KUN's pipeline:
http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline [http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline]
  Jeff's samples:
  Jeff's samples:
  Kun:LabNotes/Haplotyping/2010-9-17 [http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/Haplotyping/2010-9-17]
  Kun:LabNotes/Haplotyping/2010-9-17 [http://genome-tech.ucsd.edu/LabNotes/index.php/Kun:LabNotes/Haplotyping/2010-9-17]

Latest revision as of 21:02, 31 October 2013

Examples[edit]

KUN's pipeline:
http://genome-tech.ucsd.edu/LabNotes/index.php/RNAseq_pipeline [1]
Jeff's samples:
Kun:LabNotes/Haplotyping/2010-9-17 [2]
Transcriptome:
Kun:LabNotes/SingleCellExpr/2011-6-13 [3]
Haplotyping:
Kun:LabNotes/Haplotyping/2011-6-14 [4]

Data analysis[edit]

RNAseq analysis key notes[edit]

  • iGenome packages [5]
  1. UCSC genome package: [6]
  2. Ensemble genome package: [7]
  • Comparison of RNAseq analysis programs: [8]